Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08965

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08960 and CA264_08965 are separated by 242 nucleotidesCA264_08965 and CA264_08970 are separated by 213 nucleotides CA264_08960: CA264_08960 - haloalkane dehalogenase, at 2,092,364 to 2,093,248 _08960 CA264_08965: CA264_08965 - ketoacyl reductase, at 2,093,491 to 2,094,306 _08965 CA264_08970: CA264_08970 - glycoside hydrolase family 15, at 2,094,520 to 2,096,244 _08970 Position (kb) 2093 2094 2095Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2092.507 kb on - strand, within CA264_08960at 2092.510 kb on + strand, within CA264_08960at 2092.576 kb on - strand, within CA264_08960at 2092.580 kb on + strand, within CA264_08960at 2092.580 kb on + strand, within CA264_08960at 2092.580 kb on + strand, within CA264_08960at 2092.580 kb on + strand, within CA264_08960at 2092.581 kb on - strand, within CA264_08960at 2092.668 kb on + strand, within CA264_08960at 2092.734 kb on + strand, within CA264_08960at 2092.735 kb on - strand, within CA264_08960at 2092.735 kb on - strand, within CA264_08960at 2092.759 kb on + strand, within CA264_08960at 2092.759 kb on + strand, within CA264_08960at 2092.760 kb on - strand, within CA264_08960at 2092.847 kb on + strand, within CA264_08960at 2092.847 kb on + strand, within CA264_08960at 2092.848 kb on - strand, within CA264_08960at 2092.848 kb on - strand, within CA264_08960at 2092.849 kb on + strand, within CA264_08960at 2092.850 kb on - strand, within CA264_08960at 2092.850 kb on - strand, within CA264_08960at 2092.853 kb on + strand, within CA264_08960at 2092.854 kb on - strand, within CA264_08960at 2092.922 kb on - strand, within CA264_08960at 2092.932 kb on + strand, within CA264_08960at 2092.993 kb on + strand, within CA264_08960at 2092.995 kb on + strand, within CA264_08960at 2092.995 kb on + strand, within CA264_08960at 2092.995 kb on + strand, within CA264_08960at 2092.996 kb on - strand, within CA264_08960at 2092.996 kb on - strand, within CA264_08960at 2092.996 kb on - strand, within CA264_08960at 2093.000 kb on - strand, within CA264_08960at 2093.000 kb on - strand, within CA264_08960at 2093.126 kb on - strand, within CA264_08960at 2093.126 kb on - strand, within CA264_08960at 2093.188 kb on + strandat 2093.188 kb on + strandat 2093.189 kb on - strandat 2093.191 kb on - strandat 2093.229 kb on - strandat 2093.252 kb on + strandat 2093.278 kb on - strandat 2093.280 kb on + strandat 2093.324 kb on + strandat 2093.324 kb on + strandat 2093.324 kb on + strandat 2093.325 kb on - strandat 2093.325 kb on - strandat 2093.330 kb on + strandat 2093.331 kb on - strandat 2093.331 kb on - strandat 2093.333 kb on + strandat 2093.334 kb on - strandat 2093.334 kb on - strandat 2093.422 kb on - strandat 2093.525 kb on - strandat 2093.570 kb on - strandat 2093.617 kb on + strand, within CA264_08965at 2093.668 kb on + strand, within CA264_08965at 2093.668 kb on + strand, within CA264_08965at 2093.751 kb on + strand, within CA264_08965at 2093.775 kb on - strand, within CA264_08965at 2093.775 kb on - strand, within CA264_08965at 2093.829 kb on - strand, within CA264_08965at 2093.935 kb on + strand, within CA264_08965at 2093.936 kb on - strand, within CA264_08965at 2093.953 kb on + strand, within CA264_08965at 2094.027 kb on - strand, within CA264_08965at 2094.037 kb on + strand, within CA264_08965at 2094.037 kb on + strand, within CA264_08965at 2094.115 kb on + strand, within CA264_08965at 2094.298 kb on + strandat 2094.298 kb on + strandat 2094.299 kb on - strandat 2094.416 kb on + strandat 2094.484 kb on + strandat 2094.551 kb on + strandat 2094.556 kb on + strandat 2094.779 kb on + strand, within CA264_08970at 2094.818 kb on + strand, within CA264_08970at 2094.939 kb on - strand, within CA264_08970at 2094.964 kb on - strand, within CA264_08970at 2095.069 kb on + strand, within CA264_08970at 2095.077 kb on + strand, within CA264_08970at 2095.077 kb on + strand, within CA264_08970at 2095.085 kb on + strand, within CA264_08970at 2095.085 kb on + strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.161 kb on - strand, within CA264_08970at 2095.273 kb on + strand, within CA264_08970at 2095.274 kb on - strand, within CA264_08970at 2095.298 kb on + strand, within CA264_08970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,092,507 - CA264_08960 0.16 -0.1
2,092,510 + CA264_08960 0.16 -0.2
2,092,576 - CA264_08960 0.24 +0.2
2,092,580 + CA264_08960 0.24 +0.4
2,092,580 + CA264_08960 0.24 -3.1
2,092,580 + CA264_08960 0.24 -0.4
2,092,580 + CA264_08960 0.24 +0.7
2,092,581 - CA264_08960 0.25 -0.6
2,092,668 + CA264_08960 0.34 -0.8
2,092,734 + CA264_08960 0.42 +0.4
2,092,735 - CA264_08960 0.42 -0.9
2,092,735 - CA264_08960 0.42 +1.1
2,092,759 + CA264_08960 0.45 -0.0
2,092,759 + CA264_08960 0.45 +0.0
2,092,760 - CA264_08960 0.45 -0.3
2,092,847 + CA264_08960 0.55 +0.9
2,092,847 + CA264_08960 0.55 -0.3
2,092,848 - CA264_08960 0.55 -0.6
2,092,848 - CA264_08960 0.55 -1.3
2,092,849 + CA264_08960 0.55 +1.2
2,092,850 - CA264_08960 0.55 +0.9
2,092,850 - CA264_08960 0.55 -1.8
2,092,853 + CA264_08960 0.55 -0.8
2,092,854 - CA264_08960 0.55 -0.2
2,092,922 - CA264_08960 0.63 +2.3
2,092,932 + CA264_08960 0.64 -0.8
2,092,993 + CA264_08960 0.71 -0.4
2,092,995 + CA264_08960 0.71 -0.3
2,092,995 + CA264_08960 0.71 -0.6
2,092,995 + CA264_08960 0.71 -0.1
2,092,996 - CA264_08960 0.71 -1.3
2,092,996 - CA264_08960 0.71 -0.4
2,092,996 - CA264_08960 0.71 -1.0
2,093,000 - CA264_08960 0.72 +0.1
2,093,000 - CA264_08960 0.72 +0.3
2,093,126 - CA264_08960 0.86 -0.4
2,093,126 - CA264_08960 0.86 -1.4
2,093,188 + -0.2
2,093,188 + +0.6
2,093,189 - -0.9
2,093,191 - -1.5
2,093,229 - +0.3
2,093,252 + -1.1
2,093,278 - +1.2
2,093,280 + -0.9
2,093,324 + -0.2
2,093,324 + +0.7
2,093,324 + -0.5
2,093,325 - -1.9
2,093,325 - -0.8
2,093,330 + -1.2
2,093,331 - -0.7
2,093,331 - -1.3
2,093,333 + +0.2
2,093,334 - +0.7
2,093,334 - -0.1
2,093,422 - +1.8
2,093,525 - -1.3
2,093,570 - -1.7
2,093,617 + CA264_08965 0.15 -1.1
2,093,668 + CA264_08965 0.22 -1.5
2,093,668 + CA264_08965 0.22 -0.7
2,093,751 + CA264_08965 0.32 +0.1
2,093,775 - CA264_08965 0.35 +0.7
2,093,775 - CA264_08965 0.35 +0.2
2,093,829 - CA264_08965 0.41 +0.0
2,093,935 + CA264_08965 0.54 -0.9
2,093,936 - CA264_08965 0.55 +0.5
2,093,953 + CA264_08965 0.57 -0.7
2,094,027 - CA264_08965 0.66 -0.3
2,094,037 + CA264_08965 0.67 -0.7
2,094,037 + CA264_08965 0.67 -2.9
2,094,115 + CA264_08965 0.76 -1.6
2,094,298 + -0.4
2,094,298 + -0.4
2,094,299 - -2.8
2,094,416 + +1.7
2,094,484 + +0.5
2,094,551 + +0.2
2,094,556 + +0.5
2,094,779 + CA264_08970 0.15 +0.7
2,094,818 + CA264_08970 0.17 -0.0
2,094,939 - CA264_08970 0.24 +0.7
2,094,964 - CA264_08970 0.26 -0.5
2,095,069 + CA264_08970 0.32 +0.1
2,095,077 + CA264_08970 0.32 +0.6
2,095,077 + CA264_08970 0.32 -1.0
2,095,085 + CA264_08970 0.33 +2.9
2,095,085 + CA264_08970 0.33 -0.4
2,095,086 - CA264_08970 0.33 -1.0
2,095,086 - CA264_08970 0.33 -0.8
2,095,086 - CA264_08970 0.33 +0.5
2,095,161 - CA264_08970 0.37 -0.1
2,095,273 + CA264_08970 0.44 +0.8
2,095,274 - CA264_08970 0.44 +0.1
2,095,298 + CA264_08970 0.45 -0.2

Or see this region's nucleotide sequence