Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08960 and CA264_08965 are separated by 242 nucleotides CA264_08965 and CA264_08970 are separated by 213 nucleotides
CA264_08960: CA264_08960 - haloalkane dehalogenase, at 2,092,364 to 2,093,248
_08960
CA264_08965: CA264_08965 - ketoacyl reductase, at 2,093,491 to 2,094,306
_08965
CA264_08970: CA264_08970 - glycoside hydrolase family 15, at 2,094,520 to 2,096,244
_08970
Position (kb)
2093
2094
2095 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2092.507 kb on - strand, within CA264_08960 at 2092.510 kb on + strand, within CA264_08960 at 2092.576 kb on - strand, within CA264_08960 at 2092.580 kb on + strand, within CA264_08960 at 2092.580 kb on + strand, within CA264_08960 at 2092.580 kb on + strand, within CA264_08960 at 2092.580 kb on + strand, within CA264_08960 at 2092.581 kb on - strand, within CA264_08960 at 2092.668 kb on + strand, within CA264_08960 at 2092.734 kb on + strand, within CA264_08960 at 2092.735 kb on - strand, within CA264_08960 at 2092.735 kb on - strand, within CA264_08960 at 2092.759 kb on + strand, within CA264_08960 at 2092.759 kb on + strand, within CA264_08960 at 2092.760 kb on - strand, within CA264_08960 at 2092.847 kb on + strand, within CA264_08960 at 2092.847 kb on + strand, within CA264_08960 at 2092.848 kb on - strand, within CA264_08960 at 2092.848 kb on - strand, within CA264_08960 at 2092.849 kb on + strand, within CA264_08960 at 2092.850 kb on - strand, within CA264_08960 at 2092.850 kb on - strand, within CA264_08960 at 2092.853 kb on + strand, within CA264_08960 at 2092.854 kb on - strand, within CA264_08960 at 2092.922 kb on - strand, within CA264_08960 at 2092.932 kb on + strand, within CA264_08960 at 2092.993 kb on + strand, within CA264_08960 at 2092.995 kb on + strand, within CA264_08960 at 2092.995 kb on + strand, within CA264_08960 at 2092.995 kb on + strand, within CA264_08960 at 2092.996 kb on - strand, within CA264_08960 at 2092.996 kb on - strand, within CA264_08960 at 2092.996 kb on - strand, within CA264_08960 at 2093.000 kb on - strand, within CA264_08960 at 2093.000 kb on - strand, within CA264_08960 at 2093.126 kb on - strand, within CA264_08960 at 2093.126 kb on - strand, within CA264_08960 at 2093.188 kb on + strand at 2093.188 kb on + strand at 2093.189 kb on - strand at 2093.191 kb on - strand at 2093.229 kb on - strand at 2093.252 kb on + strand at 2093.278 kb on - strand at 2093.280 kb on + strand at 2093.324 kb on + strand at 2093.324 kb on + strand at 2093.324 kb on + strand at 2093.325 kb on - strand at 2093.325 kb on - strand at 2093.330 kb on + strand at 2093.331 kb on - strand at 2093.331 kb on - strand at 2093.333 kb on + strand at 2093.334 kb on - strand at 2093.334 kb on - strand at 2093.422 kb on - strand at 2093.525 kb on - strand at 2093.570 kb on - strand at 2093.617 kb on + strand, within CA264_08965 at 2093.668 kb on + strand, within CA264_08965 at 2093.668 kb on + strand, within CA264_08965 at 2093.751 kb on + strand, within CA264_08965 at 2093.775 kb on - strand, within CA264_08965 at 2093.775 kb on - strand, within CA264_08965 at 2093.829 kb on - strand, within CA264_08965 at 2093.935 kb on + strand, within CA264_08965 at 2093.936 kb on - strand, within CA264_08965 at 2093.953 kb on + strand, within CA264_08965 at 2094.027 kb on - strand, within CA264_08965 at 2094.037 kb on + strand, within CA264_08965 at 2094.037 kb on + strand, within CA264_08965 at 2094.115 kb on + strand, within CA264_08965 at 2094.298 kb on + strand at 2094.298 kb on + strand at 2094.299 kb on - strand at 2094.416 kb on + strand at 2094.484 kb on + strand at 2094.551 kb on + strand at 2094.556 kb on + strand at 2094.779 kb on + strand, within CA264_08970 at 2094.818 kb on + strand, within CA264_08970 at 2094.939 kb on - strand, within CA264_08970 at 2094.964 kb on - strand, within CA264_08970 at 2095.069 kb on + strand, within CA264_08970 at 2095.077 kb on + strand, within CA264_08970 at 2095.077 kb on + strand, within CA264_08970 at 2095.085 kb on + strand, within CA264_08970 at 2095.085 kb on + strand, within CA264_08970 at 2095.086 kb on - strand, within CA264_08970 at 2095.086 kb on - strand, within CA264_08970 at 2095.086 kb on - strand, within CA264_08970 at 2095.161 kb on - strand, within CA264_08970 at 2095.273 kb on + strand, within CA264_08970 at 2095.274 kb on - strand, within CA264_08970 at 2095.298 kb on + strand, within CA264_08970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,092,507 - CA264_08960 0.16 -0.1 2,092,510 + CA264_08960 0.16 -0.2 2,092,576 - CA264_08960 0.24 +0.2 2,092,580 + CA264_08960 0.24 +0.4 2,092,580 + CA264_08960 0.24 -3.1 2,092,580 + CA264_08960 0.24 -0.4 2,092,580 + CA264_08960 0.24 +0.7 2,092,581 - CA264_08960 0.25 -0.6 2,092,668 + CA264_08960 0.34 -0.8 2,092,734 + CA264_08960 0.42 +0.4 2,092,735 - CA264_08960 0.42 -0.9 2,092,735 - CA264_08960 0.42 +1.1 2,092,759 + CA264_08960 0.45 -0.0 2,092,759 + CA264_08960 0.45 +0.0 2,092,760 - CA264_08960 0.45 -0.3 2,092,847 + CA264_08960 0.55 +0.9 2,092,847 + CA264_08960 0.55 -0.3 2,092,848 - CA264_08960 0.55 -0.6 2,092,848 - CA264_08960 0.55 -1.3 2,092,849 + CA264_08960 0.55 +1.2 2,092,850 - CA264_08960 0.55 +0.9 2,092,850 - CA264_08960 0.55 -1.8 2,092,853 + CA264_08960 0.55 -0.8 2,092,854 - CA264_08960 0.55 -0.2 2,092,922 - CA264_08960 0.63 +2.3 2,092,932 + CA264_08960 0.64 -0.8 2,092,993 + CA264_08960 0.71 -0.4 2,092,995 + CA264_08960 0.71 -0.3 2,092,995 + CA264_08960 0.71 -0.6 2,092,995 + CA264_08960 0.71 -0.1 2,092,996 - CA264_08960 0.71 -1.3 2,092,996 - CA264_08960 0.71 -0.4 2,092,996 - CA264_08960 0.71 -1.0 2,093,000 - CA264_08960 0.72 +0.1 2,093,000 - CA264_08960 0.72 +0.3 2,093,126 - CA264_08960 0.86 -0.4 2,093,126 - CA264_08960 0.86 -1.4 2,093,188 + -0.2 2,093,188 + +0.6 2,093,189 - -0.9 2,093,191 - -1.5 2,093,229 - +0.3 2,093,252 + -1.1 2,093,278 - +1.2 2,093,280 + -0.9 2,093,324 + -0.2 2,093,324 + +0.7 2,093,324 + -0.5 2,093,325 - -1.9 2,093,325 - -0.8 2,093,330 + -1.2 2,093,331 - -0.7 2,093,331 - -1.3 2,093,333 + +0.2 2,093,334 - +0.7 2,093,334 - -0.1 2,093,422 - +1.8 2,093,525 - -1.3 2,093,570 - -1.7 2,093,617 + CA264_08965 0.15 -1.1 2,093,668 + CA264_08965 0.22 -1.5 2,093,668 + CA264_08965 0.22 -0.7 2,093,751 + CA264_08965 0.32 +0.1 2,093,775 - CA264_08965 0.35 +0.7 2,093,775 - CA264_08965 0.35 +0.2 2,093,829 - CA264_08965 0.41 +0.0 2,093,935 + CA264_08965 0.54 -0.9 2,093,936 - CA264_08965 0.55 +0.5 2,093,953 + CA264_08965 0.57 -0.7 2,094,027 - CA264_08965 0.66 -0.3 2,094,037 + CA264_08965 0.67 -0.7 2,094,037 + CA264_08965 0.67 -2.9 2,094,115 + CA264_08965 0.76 -1.6 2,094,298 + -0.4 2,094,298 + -0.4 2,094,299 - -2.8 2,094,416 + +1.7 2,094,484 + +0.5 2,094,551 + +0.2 2,094,556 + +0.5 2,094,779 + CA264_08970 0.15 +0.7 2,094,818 + CA264_08970 0.17 -0.0 2,094,939 - CA264_08970 0.24 +0.7 2,094,964 - CA264_08970 0.26 -0.5 2,095,069 + CA264_08970 0.32 +0.1 2,095,077 + CA264_08970 0.32 +0.6 2,095,077 + CA264_08970 0.32 -1.0 2,095,085 + CA264_08970 0.33 +2.9 2,095,085 + CA264_08970 0.33 -0.4 2,095,086 - CA264_08970 0.33 -1.0 2,095,086 - CA264_08970 0.33 -0.8 2,095,086 - CA264_08970 0.33 +0.5 2,095,161 - CA264_08970 0.37 -0.1 2,095,273 + CA264_08970 0.44 +0.8 2,095,274 - CA264_08970 0.44 +0.1 2,095,298 + CA264_08970 0.45 -0.2
Or see this region's nucleotide sequence