Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08940 and CA264_08945 are separated by 187 nucleotides CA264_08945 and CA264_08950 are separated by 368 nucleotides
CA264_08940: CA264_08940 - cysteine synthase B, at 2,088,186 to 2,089,070
_08940
CA264_08945: CA264_08945 - type 1 glutamine amidotransferase domain-containing protein, at 2,089,258 to 2,089,938
_08945
CA264_08950: CA264_08950 - short-chain dehydrogenase/reductase, at 2,090,307 to 2,091,143
_08950
Position (kb)
2089
2090 Strain fitness (log2 ratio)
-2
-1
0
1 at 2088.375 kb on + strand, within CA264_08940 at 2088.376 kb on - strand, within CA264_08940 at 2088.667 kb on + strand, within CA264_08940 at 2088.698 kb on - strand, within CA264_08940 at 2088.702 kb on + strand, within CA264_08940 at 2088.897 kb on + strand, within CA264_08940 at 2088.934 kb on + strand, within CA264_08940 at 2089.014 kb on + strand at 2089.059 kb on + strand at 2089.060 kb on - strand at 2089.088 kb on + strand at 2089.089 kb on - strand at 2089.098 kb on - strand at 2089.120 kb on + strand at 2089.345 kb on + strand, within CA264_08945 at 2089.377 kb on - strand, within CA264_08945 at 2089.380 kb on + strand, within CA264_08945 at 2089.381 kb on - strand, within CA264_08945 at 2089.381 kb on - strand, within CA264_08945 at 2089.554 kb on + strand, within CA264_08945 at 2089.594 kb on - strand, within CA264_08945 at 2089.844 kb on + strand, within CA264_08945 at 2089.844 kb on + strand, within CA264_08945 at 2089.847 kb on + strand, within CA264_08945 at 2089.848 kb on - strand, within CA264_08945 at 2089.948 kb on + strand at 2089.949 kb on - strand at 2089.949 kb on - strand at 2089.953 kb on + strand at 2089.959 kb on + strand at 2089.960 kb on - strand at 2090.050 kb on + strand at 2090.083 kb on + strand at 2090.084 kb on - strand at 2090.118 kb on + strand at 2090.202 kb on + strand at 2090.227 kb on + strand at 2090.238 kb on + strand at 2090.249 kb on + strand at 2090.258 kb on - strand at 2090.277 kb on - strand at 2090.309 kb on - strand at 2090.395 kb on + strand, within CA264_08950 at 2090.396 kb on - strand, within CA264_08950 at 2090.542 kb on + strand, within CA264_08950 at 2090.561 kb on + strand, within CA264_08950 at 2090.562 kb on - strand, within CA264_08950 at 2090.572 kb on - strand, within CA264_08950 at 2090.616 kb on + strand, within CA264_08950 at 2090.617 kb on - strand, within CA264_08950 at 2090.628 kb on + strand, within CA264_08950 at 2090.628 kb on + strand, within CA264_08950 at 2090.718 kb on - strand, within CA264_08950 at 2090.749 kb on - strand, within CA264_08950 at 2090.763 kb on - strand, within CA264_08950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,088,375 + CA264_08940 0.21 +0.4 2,088,376 - CA264_08940 0.21 -0.3 2,088,667 + CA264_08940 0.54 -1.0 2,088,698 - CA264_08940 0.58 +0.3 2,088,702 + CA264_08940 0.58 +0.0 2,088,897 + CA264_08940 0.80 +1.1 2,088,934 + CA264_08940 0.85 -0.6 2,089,014 + -0.3 2,089,059 + +0.0 2,089,060 - -0.1 2,089,088 + +0.6 2,089,089 - -0.5 2,089,098 - -0.1 2,089,120 + -0.2 2,089,345 + CA264_08945 0.13 -0.8 2,089,377 - CA264_08945 0.17 +0.7 2,089,380 + CA264_08945 0.18 +1.2 2,089,381 - CA264_08945 0.18 -0.0 2,089,381 - CA264_08945 0.18 +0.4 2,089,554 + CA264_08945 0.43 -0.2 2,089,594 - CA264_08945 0.49 +0.2 2,089,844 + CA264_08945 0.86 -0.9 2,089,844 + CA264_08945 0.86 -1.9 2,089,847 + CA264_08945 0.86 +1.4 2,089,848 - CA264_08945 0.87 -0.1 2,089,948 + +1.0 2,089,949 - +0.1 2,089,949 - -0.8 2,089,953 + -0.4 2,089,959 + -0.5 2,089,960 - -0.2 2,090,050 + +0.5 2,090,083 + -1.3 2,090,084 - -0.4 2,090,118 + -1.6 2,090,202 + -0.1 2,090,227 + -0.7 2,090,238 + -0.3 2,090,249 + +0.1 2,090,258 - -0.2 2,090,277 - -0.5 2,090,309 - -0.2 2,090,395 + CA264_08950 0.11 +0.9 2,090,396 - CA264_08950 0.11 -0.4 2,090,542 + CA264_08950 0.28 -1.4 2,090,561 + CA264_08950 0.30 -1.4 2,090,562 - CA264_08950 0.30 -0.6 2,090,572 - CA264_08950 0.32 -0.6 2,090,616 + CA264_08950 0.37 +0.4 2,090,617 - CA264_08950 0.37 +0.4 2,090,628 + CA264_08950 0.38 -0.1 2,090,628 + CA264_08950 0.38 +0.5 2,090,718 - CA264_08950 0.49 +0.7 2,090,749 - CA264_08950 0.53 -0.3 2,090,763 - CA264_08950 0.54 +0.4
Or see this region's nucleotide sequence