Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08880

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08875 and CA264_08880 are separated by 124 nucleotidesCA264_08880 and CA264_08885 are separated by 1 nucleotidesCA264_08885 and CA264_08890 overlap by 34 nucleotides CA264_08875: CA264_08875 - urocanate hydratase, at 2,072,468 to 2,074,171 _08875 CA264_08880: CA264_08880 - SAM-dependent methyltransferase, at 2,074,296 to 2,074,919 _08880 CA264_08885: CA264_08885 - hypothetical protein, at 2,074,921 to 2,075,862 _08885 CA264_08890: CA264_08890 - hypothetical protein, at 2,075,829 to 2,076,461 _08890 Position (kb) 2074 2075Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2073.307 kb on - strandat 2073.359 kb on - strand, within CA264_08875at 2073.359 kb on - strand, within CA264_08875at 2073.364 kb on + strand, within CA264_08875at 2073.413 kb on + strand, within CA264_08875at 2073.472 kb on - strand, within CA264_08875at 2073.679 kb on - strand, within CA264_08875at 2073.693 kb on - strand, within CA264_08875at 2073.694 kb on + strand, within CA264_08875at 2073.694 kb on + strand, within CA264_08875at 2073.741 kb on + strand, within CA264_08875at 2073.741 kb on + strand, within CA264_08875at 2073.742 kb on - strand, within CA264_08875at 2073.742 kb on - strand, within CA264_08875at 2073.742 kb on - strand, within CA264_08875at 2073.824 kb on + strand, within CA264_08875at 2073.972 kb on + strand, within CA264_08875at 2074.030 kb on + strandat 2074.031 kb on - strandat 2074.092 kb on + strandat 2074.092 kb on + strandat 2074.092 kb on + strandat 2074.147 kb on + strandat 2074.147 kb on + strandat 2074.148 kb on - strandat 2074.148 kb on - strandat 2074.171 kb on + strandat 2074.171 kb on + strandat 2074.172 kb on - strandat 2074.172 kb on - strandat 2074.172 kb on - strandat 2074.175 kb on + strandat 2074.188 kb on - strandat 2074.192 kb on + strandat 2074.192 kb on + strandat 2074.232 kb on + strandat 2074.244 kb on + strandat 2074.245 kb on - strandat 2074.283 kb on + strandat 2074.394 kb on - strand, within CA264_08880at 2074.432 kb on + strand, within CA264_08880at 2074.433 kb on - strand, within CA264_08880at 2074.437 kb on + strand, within CA264_08880at 2074.438 kb on - strand, within CA264_08880at 2074.492 kb on + strand, within CA264_08880at 2074.522 kb on + strand, within CA264_08880at 2074.552 kb on + strand, within CA264_08880at 2074.552 kb on + strand, within CA264_08880at 2074.553 kb on - strand, within CA264_08880at 2074.681 kb on + strand, within CA264_08880at 2074.764 kb on + strand, within CA264_08880at 2074.918 kb on - strandat 2074.922 kb on + strandat 2075.000 kb on + strandat 2075.049 kb on - strand, within CA264_08885at 2075.090 kb on - strand, within CA264_08885at 2075.134 kb on - strand, within CA264_08885at 2075.134 kb on - strand, within CA264_08885at 2075.220 kb on + strand, within CA264_08885at 2075.221 kb on - strand, within CA264_08885at 2075.299 kb on + strand, within CA264_08885at 2075.299 kb on + strand, within CA264_08885at 2075.373 kb on + strand, within CA264_08885at 2075.374 kb on - strand, within CA264_08885at 2075.395 kb on + strand, within CA264_08885at 2075.396 kb on - strand, within CA264_08885at 2075.420 kb on + strand, within CA264_08885at 2075.421 kb on - strand, within CA264_08885at 2075.444 kb on - strand, within CA264_08885at 2075.458 kb on - strand, within CA264_08885at 2075.545 kb on + strand, within CA264_08885at 2075.545 kb on + strand, within CA264_08885at 2075.546 kb on - strand, within CA264_08885at 2075.562 kb on + strand, within CA264_08885at 2075.563 kb on - strand, within CA264_08885at 2075.563 kb on - strand, within CA264_08885at 2075.567 kb on + strand, within CA264_08885at 2075.568 kb on - strand, within CA264_08885at 2075.583 kb on + strand, within CA264_08885at 2075.584 kb on - strand, within CA264_08885at 2075.681 kb on + strand, within CA264_08885at 2075.682 kb on - strand, within CA264_08885at 2075.759 kb on - strand, within CA264_08885at 2075.794 kb on - strandat 2075.794 kb on - strandat 2075.794 kb on - strandat 2075.862 kb on + strandat 2075.862 kb on + strandat 2075.905 kb on + strand, within CA264_08890

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,073,307 - +2.5
2,073,359 - CA264_08875 0.52 +1.3
2,073,359 - CA264_08875 0.52 -0.2
2,073,364 + CA264_08875 0.53 -0.2
2,073,413 + CA264_08875 0.55 -1.1
2,073,472 - CA264_08875 0.59 +1.1
2,073,679 - CA264_08875 0.71 +3.5
2,073,693 - CA264_08875 0.72 -0.8
2,073,694 + CA264_08875 0.72 -0.3
2,073,694 + CA264_08875 0.72 +0.9
2,073,741 + CA264_08875 0.75 -0.3
2,073,741 + CA264_08875 0.75 +2.8
2,073,742 - CA264_08875 0.75 +0.3
2,073,742 - CA264_08875 0.75 -0.8
2,073,742 - CA264_08875 0.75 -0.8
2,073,824 + CA264_08875 0.80 -0.3
2,073,972 + CA264_08875 0.88 -0.7
2,074,030 + +1.3
2,074,031 - -1.8
2,074,092 + -0.5
2,074,092 + +1.5
2,074,092 + -1.1
2,074,147 + +0.5
2,074,147 + -1.7
2,074,148 - +0.8
2,074,148 - -0.4
2,074,171 + -0.1
2,074,171 + +0.2
2,074,172 - -1.5
2,074,172 - -0.4
2,074,172 - -0.9
2,074,175 + -0.7
2,074,188 - +0.4
2,074,192 + +0.4
2,074,192 + -0.4
2,074,232 + +1.5
2,074,244 + +1.0
2,074,245 - -2.2
2,074,283 + -0.3
2,074,394 - CA264_08880 0.16 -0.8
2,074,432 + CA264_08880 0.22 -1.8
2,074,433 - CA264_08880 0.22 -0.1
2,074,437 + CA264_08880 0.23 +0.7
2,074,438 - CA264_08880 0.23 +0.6
2,074,492 + CA264_08880 0.31 -1.3
2,074,522 + CA264_08880 0.36 -0.2
2,074,552 + CA264_08880 0.41 -0.7
2,074,552 + CA264_08880 0.41 +0.5
2,074,553 - CA264_08880 0.41 -0.4
2,074,681 + CA264_08880 0.62 -2.0
2,074,764 + CA264_08880 0.75 -0.8
2,074,918 - -2.0
2,074,922 + -0.2
2,075,000 + -0.9
2,075,049 - CA264_08885 0.14 +0.5
2,075,090 - CA264_08885 0.18 +0.2
2,075,134 - CA264_08885 0.23 +0.9
2,075,134 - CA264_08885 0.23 +0.2
2,075,220 + CA264_08885 0.32 +0.3
2,075,221 - CA264_08885 0.32 -0.5
2,075,299 + CA264_08885 0.40 -1.7
2,075,299 + CA264_08885 0.40 -0.3
2,075,373 + CA264_08885 0.48 -0.8
2,075,374 - CA264_08885 0.48 +0.1
2,075,395 + CA264_08885 0.50 -0.3
2,075,396 - CA264_08885 0.50 -1.8
2,075,420 + CA264_08885 0.53 +1.8
2,075,421 - CA264_08885 0.53 -0.2
2,075,444 - CA264_08885 0.56 -0.9
2,075,458 - CA264_08885 0.57 -0.8
2,075,545 + CA264_08885 0.66 -0.6
2,075,545 + CA264_08885 0.66 -1.1
2,075,546 - CA264_08885 0.66 -0.8
2,075,562 + CA264_08885 0.68 +0.6
2,075,563 - CA264_08885 0.68 -1.6
2,075,563 - CA264_08885 0.68 +0.1
2,075,567 + CA264_08885 0.69 -0.5
2,075,568 - CA264_08885 0.69 -0.6
2,075,583 + CA264_08885 0.70 -0.6
2,075,584 - CA264_08885 0.70 -0.8
2,075,681 + CA264_08885 0.81 -0.8
2,075,682 - CA264_08885 0.81 +0.7
2,075,759 - CA264_08885 0.89 +0.7
2,075,794 - +0.2
2,075,794 - -1.8
2,075,794 - -0.8
2,075,862 + -0.6
2,075,862 + +0.4
2,075,905 + CA264_08890 0.12 -1.8

Or see this region's nucleotide sequence