Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08580 and CA264_08585 are separated by 50 nucleotides CA264_08585 and CA264_08590 are separated by 178 nucleotides CA264_08590 and CA264_08595 are separated by 167 nucleotides
CA264_08580: CA264_08580 - K+/H+ antiporter, at 1,992,470 to 1,993,927
_08580
CA264_08585: CA264_08585 - hypothetical protein, at 1,993,978 to 1,994,160
_08585
CA264_08590: CA264_08590 - hypothetical protein, at 1,994,339 to 1,994,731
_08590
CA264_08595: CA264_08595 - penicillin-binding protein, at 1,994,899 to 1,997,364
_08595
Position (kb)
1994
1995 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1993.429 kb on - strand, within CA264_08580 at 1993.445 kb on - strand, within CA264_08580 at 1993.481 kb on - strand, within CA264_08580 at 1993.481 kb on - strand, within CA264_08580 at 1993.537 kb on + strand, within CA264_08580 at 1993.593 kb on + strand, within CA264_08580 at 1993.593 kb on + strand, within CA264_08580 at 1993.594 kb on - strand, within CA264_08580 at 1993.594 kb on - strand, within CA264_08580 at 1993.594 kb on - strand, within CA264_08580 at 1993.667 kb on + strand, within CA264_08580 at 1993.868 kb on + strand at 1993.868 kb on + strand at 1993.868 kb on + strand at 1993.886 kb on + strand at 1993.887 kb on - strand at 1993.899 kb on - strand at 1993.899 kb on - strand at 1993.918 kb on + strand at 1993.919 kb on - strand at 1993.927 kb on + strand at 1993.927 kb on + strand at 1993.948 kb on - strand at 1993.948 kb on - strand at 1993.950 kb on + strand at 1993.975 kb on - strand at 1993.994 kb on - strand at 1994.020 kb on + strand, within CA264_08585 at 1994.037 kb on + strand, within CA264_08585 at 1994.038 kb on - strand, within CA264_08585 at 1994.038 kb on - strand, within CA264_08585 at 1994.069 kb on + strand, within CA264_08585 at 1994.072 kb on + strand, within CA264_08585 at 1994.125 kb on - strand, within CA264_08585 at 1994.125 kb on - strand, within CA264_08585 at 1994.131 kb on + strand, within CA264_08585 at 1994.132 kb on - strand, within CA264_08585 at 1994.134 kb on - strand, within CA264_08585 at 1994.134 kb on - strand, within CA264_08585 at 1994.134 kb on - strand, within CA264_08585 at 1994.134 kb on - strand, within CA264_08585 at 1994.172 kb on - strand at 1994.223 kb on - strand at 1994.357 kb on + strand at 1994.358 kb on - strand at 1994.358 kb on - strand at 1994.410 kb on + strand, within CA264_08590 at 1994.411 kb on - strand, within CA264_08590 at 1994.411 kb on - strand, within CA264_08590 at 1994.546 kb on + strand, within CA264_08590 at 1994.629 kb on - strand, within CA264_08590 at 1994.691 kb on + strand, within CA264_08590 at 1994.695 kb on + strand at 1994.695 kb on + strand at 1994.716 kb on + strand at 1994.753 kb on + strand at 1994.759 kb on - strand at 1994.908 kb on - strand at 1994.908 kb on - strand at 1994.916 kb on + strand at 1994.916 kb on + strand at 1994.916 kb on + strand at 1994.917 kb on - strand at 1994.921 kb on + strand at 1995.026 kb on - strand at 1995.077 kb on - strand at 1995.100 kb on + strand at 1995.155 kb on - strand, within CA264_08595 at 1995.260 kb on - strand, within CA264_08595 at 1995.262 kb on + strand, within CA264_08595 at 1995.262 kb on + strand, within CA264_08595 at 1995.262 kb on + strand, within CA264_08595 at 1995.262 kb on + strand, within CA264_08595 at 1995.263 kb on - strand, within CA264_08595 at 1995.314 kb on + strand, within CA264_08595 at 1995.314 kb on + strand, within CA264_08595 at 1995.315 kb on - strand, within CA264_08595 at 1995.365 kb on + strand, within CA264_08595 at 1995.484 kb on + strand, within CA264_08595 at 1995.554 kb on - strand, within CA264_08595 at 1995.569 kb on + strand, within CA264_08595 at 1995.613 kb on + strand, within CA264_08595 at 1995.618 kb on + strand, within CA264_08595 at 1995.718 kb on + strand, within CA264_08595 at 1995.718 kb on + strand, within CA264_08595 at 1995.718 kb on + strand, within CA264_08595 at 1995.719 kb on - strand, within CA264_08595 at 1995.719 kb on - strand, within CA264_08595 at 1995.719 kb on - strand, within CA264_08595
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,993,429 - CA264_08580 0.66 -1.1 1,993,445 - CA264_08580 0.67 +0.6 1,993,481 - CA264_08580 0.69 +2.6 1,993,481 - CA264_08580 0.69 -0.5 1,993,537 + CA264_08580 0.73 +1.0 1,993,593 + CA264_08580 0.77 -1.0 1,993,593 + CA264_08580 0.77 +1.2 1,993,594 - CA264_08580 0.77 -1.5 1,993,594 - CA264_08580 0.77 -1.4 1,993,594 - CA264_08580 0.77 -0.8 1,993,667 + CA264_08580 0.82 -0.1 1,993,868 + -0.1 1,993,868 + -0.1 1,993,868 + -0.5 1,993,886 + +0.8 1,993,887 - -0.1 1,993,899 - +1.0 1,993,899 - +0.4 1,993,918 + -0.6 1,993,919 - +0.1 1,993,927 + +1.8 1,993,927 + -0.8 1,993,948 - -2.2 1,993,948 - -2.7 1,993,950 + -0.7 1,993,975 - -0.3 1,993,994 - -2.5 1,994,020 + CA264_08585 0.23 -0.2 1,994,037 + CA264_08585 0.32 -0.7 1,994,038 - CA264_08585 0.33 +0.3 1,994,038 - CA264_08585 0.33 -1.6 1,994,069 + CA264_08585 0.50 -1.0 1,994,072 + CA264_08585 0.51 -1.6 1,994,125 - CA264_08585 0.80 -2.0 1,994,125 - CA264_08585 0.80 +1.0 1,994,131 + CA264_08585 0.84 -2.1 1,994,132 - CA264_08585 0.84 +1.0 1,994,134 - CA264_08585 0.85 -0.6 1,994,134 - CA264_08585 0.85 -2.5 1,994,134 - CA264_08585 0.85 +0.9 1,994,134 - CA264_08585 0.85 -0.8 1,994,172 - +1.6 1,994,223 - -1.5 1,994,357 + -0.3 1,994,358 - -1.5 1,994,358 - +0.3 1,994,410 + CA264_08590 0.18 +4.6 1,994,411 - CA264_08590 0.18 -1.3 1,994,411 - CA264_08590 0.18 -1.0 1,994,546 + CA264_08590 0.53 -0.9 1,994,629 - CA264_08590 0.74 -0.5 1,994,691 + CA264_08590 0.90 -1.4 1,994,695 + -1.0 1,994,695 + +0.6 1,994,716 + -0.0 1,994,753 + +1.8 1,994,759 - +1.2 1,994,908 - +0.1 1,994,908 - +1.7 1,994,916 + -0.2 1,994,916 + -0.3 1,994,916 + +0.0 1,994,917 - -0.8 1,994,921 + -1.2 1,995,026 - -0.1 1,995,077 - -1.1 1,995,100 + +0.1 1,995,155 - CA264_08595 0.10 -0.7 1,995,260 - CA264_08595 0.15 +0.6 1,995,262 + CA264_08595 0.15 +2.6 1,995,262 + CA264_08595 0.15 -1.6 1,995,262 + CA264_08595 0.15 +1.6 1,995,262 + CA264_08595 0.15 -0.0 1,995,263 - CA264_08595 0.15 -1.4 1,995,314 + CA264_08595 0.17 -0.6 1,995,314 + CA264_08595 0.17 -1.2 1,995,315 - CA264_08595 0.17 -0.8 1,995,365 + CA264_08595 0.19 -0.4 1,995,484 + CA264_08595 0.24 +0.6 1,995,554 - CA264_08595 0.27 +0.2 1,995,569 + CA264_08595 0.27 +1.0 1,995,613 + CA264_08595 0.29 +0.1 1,995,618 + CA264_08595 0.29 -0.0 1,995,718 + CA264_08595 0.33 -1.5 1,995,718 + CA264_08595 0.33 -0.8 1,995,718 + CA264_08595 0.33 -0.3 1,995,719 - CA264_08595 0.33 +0.2 1,995,719 - CA264_08595 0.33 +0.6 1,995,719 - CA264_08595 0.33 -0.2
Or see this region's nucleotide sequence