Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08505

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08495 and CA264_08500 are separated by 3 nucleotidesCA264_08500 and CA264_08505 are separated by 237 nucleotidesCA264_08505 and CA264_08510 are separated by 198 nucleotides CA264_08495: CA264_08495 - PAS domain-containing sensor histidine kinase, at 1,973,853 to 1,974,941 _08495 CA264_08500: CA264_08500 - hypothetical protein, at 1,974,945 to 1,975,409 _08500 CA264_08505: CA264_08505 - glycosyl transferase family 2, at 1,975,647 to 1,977,290 _08505 CA264_08510: CA264_08510 - thiol oxidoreductase, at 1,977,489 to 1,978,190 _08510 Position (kb) 1975 1976 1977 1978Strain fitness (log2 ratio) -2 -1 0 1 2at 1974.923 kb on + strandat 1974.923 kb on + strandat 1974.924 kb on - strandat 1974.995 kb on + strand, within CA264_08500at 1974.996 kb on - strand, within CA264_08500at 1975.018 kb on + strand, within CA264_08500at 1975.254 kb on + strand, within CA264_08500at 1975.255 kb on - strand, within CA264_08500at 1975.320 kb on + strand, within CA264_08500at 1975.320 kb on + strand, within CA264_08500at 1975.360 kb on - strand, within CA264_08500at 1975.387 kb on + strandat 1975.387 kb on + strandat 1975.462 kb on - strandat 1975.468 kb on + strandat 1975.469 kb on - strandat 1975.472 kb on - strandat 1975.535 kb on + strandat 1975.597 kb on - strandat 1975.649 kb on - strandat 1975.713 kb on - strandat 1975.734 kb on - strandat 1975.734 kb on - strandat 1975.960 kb on - strand, within CA264_08505at 1976.046 kb on + strand, within CA264_08505at 1976.156 kb on - strand, within CA264_08505at 1976.171 kb on + strand, within CA264_08505at 1976.363 kb on + strand, within CA264_08505at 1976.409 kb on + strand, within CA264_08505at 1976.440 kb on + strand, within CA264_08505at 1976.440 kb on + strand, within CA264_08505at 1976.440 kb on + strand, within CA264_08505at 1976.557 kb on + strand, within CA264_08505at 1976.557 kb on + strand, within CA264_08505at 1976.575 kb on + strand, within CA264_08505at 1976.575 kb on + strand, within CA264_08505at 1976.598 kb on + strand, within CA264_08505at 1976.880 kb on + strand, within CA264_08505at 1976.938 kb on + strand, within CA264_08505at 1976.942 kb on - strand, within CA264_08505at 1977.088 kb on + strand, within CA264_08505at 1977.234 kb on - strandat 1977.290 kb on + strandat 1977.290 kb on + strandat 1977.443 kb on + strandat 1977.445 kb on + strandat 1977.547 kb on - strandat 1977.597 kb on + strand, within CA264_08510at 1977.598 kb on - strand, within CA264_08510at 1977.598 kb on - strand, within CA264_08510at 1977.599 kb on + strand, within CA264_08510at 1977.600 kb on - strand, within CA264_08510at 1977.672 kb on + strand, within CA264_08510at 1977.677 kb on + strand, within CA264_08510at 1977.712 kb on + strand, within CA264_08510at 1977.713 kb on - strand, within CA264_08510at 1977.928 kb on + strand, within CA264_08510at 1978.072 kb on - strand, within CA264_08510at 1978.078 kb on + strand, within CA264_08510at 1978.174 kb on + strandat 1978.175 kb on - strandat 1978.200 kb on + strandat 1978.200 kb on + strandat 1978.201 kb on - strandat 1978.202 kb on + strandat 1978.202 kb on + strandat 1978.203 kb on - strandat 1978.203 kb on - strandat 1978.206 kb on + strandat 1978.206 kb on + strandat 1978.207 kb on - strandat 1978.207 kb on - strandat 1978.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,974,923 + +0.4
1,974,923 + -0.0
1,974,924 - -0.4
1,974,995 + CA264_08500 0.11 -0.1
1,974,996 - CA264_08500 0.11 +0.1
1,975,018 + CA264_08500 0.16 -1.6
1,975,254 + CA264_08500 0.66 -1.9
1,975,255 - CA264_08500 0.67 +0.2
1,975,320 + CA264_08500 0.81 +0.5
1,975,320 + CA264_08500 0.81 +2.2
1,975,360 - CA264_08500 0.89 -0.9
1,975,387 + +0.9
1,975,387 + +0.4
1,975,462 - -1.5
1,975,468 + -0.8
1,975,469 - -1.2
1,975,472 - -0.2
1,975,535 + -0.3
1,975,597 - -0.4
1,975,649 - -0.0
1,975,713 - +0.1
1,975,734 - +0.5
1,975,734 - +0.1
1,975,960 - CA264_08505 0.19 -1.2
1,976,046 + CA264_08505 0.24 -0.2
1,976,156 - CA264_08505 0.31 -0.6
1,976,171 + CA264_08505 0.32 -0.6
1,976,363 + CA264_08505 0.44 -1.9
1,976,409 + CA264_08505 0.46 +1.0
1,976,440 + CA264_08505 0.48 -1.7
1,976,440 + CA264_08505 0.48 +0.1
1,976,440 + CA264_08505 0.48 -2.7
1,976,557 + CA264_08505 0.55 +0.3
1,976,557 + CA264_08505 0.55 -0.8
1,976,575 + CA264_08505 0.56 -0.3
1,976,575 + CA264_08505 0.56 -0.3
1,976,598 + CA264_08505 0.58 -0.4
1,976,880 + CA264_08505 0.75 +1.8
1,976,938 + CA264_08505 0.79 -1.1
1,976,942 - CA264_08505 0.79 -0.4
1,977,088 + CA264_08505 0.88 -1.3
1,977,234 - -0.4
1,977,290 + -0.6
1,977,290 + +0.4
1,977,443 + -0.7
1,977,445 + -0.1
1,977,547 - +0.5
1,977,597 + CA264_08510 0.15 +0.1
1,977,598 - CA264_08510 0.16 -0.5
1,977,598 - CA264_08510 0.16 -1.7
1,977,599 + CA264_08510 0.16 -0.3
1,977,600 - CA264_08510 0.16 -1.1
1,977,672 + CA264_08510 0.26 +0.4
1,977,677 + CA264_08510 0.27 +0.2
1,977,712 + CA264_08510 0.32 -0.3
1,977,713 - CA264_08510 0.32 -0.2
1,977,928 + CA264_08510 0.63 +0.3
1,978,072 - CA264_08510 0.83 +0.6
1,978,078 + CA264_08510 0.84 +0.7
1,978,174 + +0.7
1,978,175 - +0.8
1,978,200 + -0.8
1,978,200 + -0.3
1,978,201 - -0.3
1,978,202 + +0.8
1,978,202 + +0.2
1,978,203 - +0.9
1,978,203 - -0.4
1,978,206 + -0.6
1,978,206 + -0.6
1,978,207 - -0.1
1,978,207 - -1.0
1,978,207 - +0.6

Or see this region's nucleotide sequence