Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08225

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08220 and CA264_08225 are separated by 278 nucleotidesCA264_08225 and CA264_08230 are separated by 184 nucleotides CA264_08220: CA264_08220 - hypothetical protein, at 1,900,467 to 1,901,276 _08220 CA264_08225: CA264_08225 - zinc-binding oxidoreductase, at 1,901,555 to 1,902,505 _08225 CA264_08230: CA264_08230 - TetR family transcriptional regulator, at 1,902,690 to 1,903,223 _08230 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1900.585 kb on - strand, within CA264_08220at 1900.590 kb on - strand, within CA264_08220at 1900.590 kb on - strand, within CA264_08220at 1900.590 kb on - strand, within CA264_08220at 1900.613 kb on - strand, within CA264_08220at 1900.613 kb on - strand, within CA264_08220at 1900.702 kb on + strand, within CA264_08220at 1900.795 kb on + strand, within CA264_08220at 1900.796 kb on - strand, within CA264_08220at 1900.815 kb on - strand, within CA264_08220at 1900.878 kb on - strand, within CA264_08220at 1900.937 kb on + strand, within CA264_08220at 1900.996 kb on + strand, within CA264_08220at 1901.077 kb on - strand, within CA264_08220at 1901.176 kb on + strand, within CA264_08220at 1901.177 kb on - strand, within CA264_08220at 1901.177 kb on - strand, within CA264_08220at 1901.217 kb on + strandat 1901.218 kb on - strandat 1901.219 kb on + strandat 1901.219 kb on + strandat 1901.220 kb on - strandat 1901.220 kb on - strandat 1901.220 kb on - strandat 1901.251 kb on + strandat 1901.252 kb on - strandat 1901.254 kb on + strandat 1901.255 kb on - strandat 1901.255 kb on - strandat 1901.268 kb on + strandat 1901.269 kb on - strandat 1901.283 kb on - strandat 1901.287 kb on + strandat 1901.295 kb on - strandat 1901.295 kb on - strandat 1901.295 kb on - strandat 1901.297 kb on - strandat 1901.297 kb on - strandat 1901.326 kb on + strandat 1901.329 kb on - strandat 1901.389 kb on + strandat 1901.396 kb on - strandat 1901.424 kb on - strandat 1901.429 kb on + strandat 1901.472 kb on - strandat 1901.473 kb on + strandat 1901.474 kb on - strandat 1901.485 kb on + strandat 1901.486 kb on - strandat 1901.504 kb on - strandat 1901.512 kb on - strandat 1901.530 kb on + strandat 1901.634 kb on + strandat 1901.652 kb on - strand, within CA264_08225at 1901.657 kb on + strand, within CA264_08225at 1901.657 kb on + strand, within CA264_08225at 1901.657 kb on + strand, within CA264_08225at 1901.658 kb on - strand, within CA264_08225at 1901.658 kb on - strand, within CA264_08225at 1901.770 kb on + strand, within CA264_08225at 1901.817 kb on - strand, within CA264_08225at 1901.896 kb on + strand, within CA264_08225at 1901.897 kb on - strand, within CA264_08225at 1901.904 kb on + strand, within CA264_08225at 1901.938 kb on + strand, within CA264_08225at 1901.939 kb on - strand, within CA264_08225at 1901.939 kb on - strand, within CA264_08225at 1901.939 kb on - strand, within CA264_08225at 1902.038 kb on + strand, within CA264_08225at 1902.079 kb on - strand, within CA264_08225at 1902.181 kb on + strand, within CA264_08225at 1902.181 kb on + strand, within CA264_08225at 1902.181 kb on + strand, within CA264_08225at 1902.181 kb on + strand, within CA264_08225at 1902.182 kb on - strand, within CA264_08225at 1902.182 kb on - strand, within CA264_08225at 1902.184 kb on - strand, within CA264_08225at 1902.196 kb on + strand, within CA264_08225at 1902.209 kb on + strand, within CA264_08225at 1902.231 kb on + strand, within CA264_08225at 1902.231 kb on + strand, within CA264_08225at 1902.231 kb on + strand, within CA264_08225at 1902.231 kb on + strand, within CA264_08225at 1902.232 kb on - strand, within CA264_08225at 1902.233 kb on + strand, within CA264_08225at 1902.234 kb on - strand, within CA264_08225at 1902.266 kb on - strand, within CA264_08225at 1902.364 kb on - strand, within CA264_08225at 1902.394 kb on + strand, within CA264_08225at 1902.394 kb on + strand, within CA264_08225at 1902.395 kb on - strand, within CA264_08225at 1902.450 kb on - strandat 1902.505 kb on + strandat 1902.523 kb on + strandat 1902.524 kb on - strandat 1902.524 kb on - strandat 1902.524 kb on - strandat 1902.524 kb on - strandat 1902.562 kb on - strandat 1902.562 kb on - strandat 1902.622 kb on - strandat 1902.628 kb on - strandat 1902.646 kb on + strandat 1902.647 kb on - strandat 1902.653 kb on - strandat 1902.693 kb on + strandat 1902.693 kb on + strandat 1902.694 kb on - strandat 1902.694 kb on - strandat 1902.699 kb on - strandat 1902.700 kb on + strandat 1902.700 kb on + strandat 1902.701 kb on - strandat 1902.738 kb on - strandat 1902.767 kb on - strand, within CA264_08230at 1902.811 kb on - strand, within CA264_08230at 1902.811 kb on - strand, within CA264_08230at 1902.995 kb on - strand, within CA264_08230at 1903.124 kb on + strand, within CA264_08230at 1903.124 kb on + strand, within CA264_08230at 1903.151 kb on + strand, within CA264_08230at 1903.152 kb on - strand, within CA264_08230at 1903.203 kb on + strandat 1903.203 kb on + strandat 1903.203 kb on + strandat 1903.203 kb on + strandat 1903.203 kb on + strandat 1903.204 kb on - strandat 1903.218 kb on - strandat 1903.249 kb on + strandat 1903.309 kb on + strandat 1903.330 kb on + strandat 1903.331 kb on - strandat 1903.331 kb on - strandat 1903.331 kb on - strandat 1903.339 kb on - strandat 1903.497 kb on + strandat 1903.497 kb on + strandat 1903.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,900,585 - CA264_08220 0.15 +1.6
1,900,590 - CA264_08220 0.15 +0.7
1,900,590 - CA264_08220 0.15 -0.2
1,900,590 - CA264_08220 0.15 -0.5
1,900,613 - CA264_08220 0.18 +0.4
1,900,613 - CA264_08220 0.18 -0.6
1,900,702 + CA264_08220 0.29 -0.4
1,900,795 + CA264_08220 0.40 +0.2
1,900,796 - CA264_08220 0.41 +0.5
1,900,815 - CA264_08220 0.43 -0.7
1,900,878 - CA264_08220 0.51 +1.2
1,900,937 + CA264_08220 0.58 -0.1
1,900,996 + CA264_08220 0.65 +1.7
1,901,077 - CA264_08220 0.75 +0.5
1,901,176 + CA264_08220 0.88 -0.2
1,901,177 - CA264_08220 0.88 +0.4
1,901,177 - CA264_08220 0.88 +0.2
1,901,217 + +0.5
1,901,218 - +0.6
1,901,219 + -1.1
1,901,219 + +0.8
1,901,220 - +1.1
1,901,220 - +2.6
1,901,220 - +1.0
1,901,251 + +1.0
1,901,252 - +0.2
1,901,254 + +0.4
1,901,255 - -0.1
1,901,255 - -0.2
1,901,268 + +0.2
1,901,269 - -0.5
1,901,283 - +1.8
1,901,287 + -0.5
1,901,295 - +0.4
1,901,295 - +0.8
1,901,295 - -0.2
1,901,297 - +0.6
1,901,297 - -0.6
1,901,326 + -0.4
1,901,329 - +0.5
1,901,389 + -0.1
1,901,396 - +0.3
1,901,424 - -0.3
1,901,429 + +0.4
1,901,472 - +0.0
1,901,473 + +0.1
1,901,474 - +1.2
1,901,485 + +1.3
1,901,486 - -0.6
1,901,504 - +0.7
1,901,512 - +0.4
1,901,530 + -1.2
1,901,634 + -0.3
1,901,652 - CA264_08225 0.10 -0.5
1,901,657 + CA264_08225 0.11 +0.0
1,901,657 + CA264_08225 0.11 -0.4
1,901,657 + CA264_08225 0.11 +0.3
1,901,658 - CA264_08225 0.11 +0.6
1,901,658 - CA264_08225 0.11 +1.1
1,901,770 + CA264_08225 0.23 -0.2
1,901,817 - CA264_08225 0.28 +0.7
1,901,896 + CA264_08225 0.36 -0.1
1,901,897 - CA264_08225 0.36 +0.5
1,901,904 + CA264_08225 0.37 -0.1
1,901,938 + CA264_08225 0.40 -1.0
1,901,939 - CA264_08225 0.40 -0.2
1,901,939 - CA264_08225 0.40 -0.7
1,901,939 - CA264_08225 0.40 +0.3
1,902,038 + CA264_08225 0.51 -1.7
1,902,079 - CA264_08225 0.55 +0.3
1,902,181 + CA264_08225 0.66 +0.2
1,902,181 + CA264_08225 0.66 -1.0
1,902,181 + CA264_08225 0.66 +0.1
1,902,181 + CA264_08225 0.66 +0.3
1,902,182 - CA264_08225 0.66 +4.3
1,902,182 - CA264_08225 0.66 +0.8
1,902,184 - CA264_08225 0.66 +0.5
1,902,196 + CA264_08225 0.67 +0.6
1,902,209 + CA264_08225 0.69 +2.0
1,902,231 + CA264_08225 0.71 -0.5
1,902,231 + CA264_08225 0.71 -0.9
1,902,231 + CA264_08225 0.71 -0.1
1,902,231 + CA264_08225 0.71 +0.1
1,902,232 - CA264_08225 0.71 -0.5
1,902,233 + CA264_08225 0.71 +0.7
1,902,234 - CA264_08225 0.71 +1.3
1,902,266 - CA264_08225 0.75 +0.6
1,902,364 - CA264_08225 0.85 +0.1
1,902,394 + CA264_08225 0.88 -0.4
1,902,394 + CA264_08225 0.88 -0.6
1,902,395 - CA264_08225 0.88 +1.1
1,902,450 - +1.5
1,902,505 + -1.4
1,902,523 + -0.5
1,902,524 - -0.1
1,902,524 - -0.6
1,902,524 - +0.1
1,902,524 - +2.6
1,902,562 - +1.3
1,902,562 - +0.5
1,902,622 - -1.0
1,902,628 - +0.0
1,902,646 + -0.6
1,902,647 - +0.1
1,902,653 - +0.5
1,902,693 + +0.2
1,902,693 + +0.6
1,902,694 - +0.6
1,902,694 - -0.1
1,902,699 - +0.1
1,902,700 + +1.0
1,902,700 + -1.1
1,902,701 - -2.0
1,902,738 - +0.3
1,902,767 - CA264_08230 0.14 +0.1
1,902,811 - CA264_08230 0.23 -0.1
1,902,811 - CA264_08230 0.23 -0.2
1,902,995 - CA264_08230 0.57 -0.1
1,903,124 + CA264_08230 0.81 +1.0
1,903,124 + CA264_08230 0.81 +1.9
1,903,151 + CA264_08230 0.86 +1.8
1,903,152 - CA264_08230 0.87 -2.4
1,903,203 + -0.2
1,903,203 + +0.3
1,903,203 + +2.0
1,903,203 + +0.1
1,903,203 + +0.7
1,903,204 - +0.4
1,903,218 - +0.1
1,903,249 + +1.8
1,903,309 + +0.4
1,903,330 + +0.2
1,903,331 - +1.2
1,903,331 - +1.0
1,903,331 - -0.3
1,903,339 - +0.1
1,903,497 + +0.4
1,903,497 + -2.8
1,903,498 - -1.9

Or see this region's nucleotide sequence