Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08220 and CA264_08225 are separated by 278 nucleotides CA264_08225 and CA264_08230 are separated by 184 nucleotides
CA264_08220: CA264_08220 - hypothetical protein, at 1,900,467 to 1,901,276
_08220
CA264_08225: CA264_08225 - zinc-binding oxidoreductase, at 1,901,555 to 1,902,505
_08225
CA264_08230: CA264_08230 - TetR family transcriptional regulator, at 1,902,690 to 1,903,223
_08230
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1900.585 kb on - strand, within CA264_08220 at 1900.590 kb on - strand, within CA264_08220 at 1900.590 kb on - strand, within CA264_08220 at 1900.590 kb on - strand, within CA264_08220 at 1900.613 kb on - strand, within CA264_08220 at 1900.613 kb on - strand, within CA264_08220 at 1900.702 kb on + strand, within CA264_08220 at 1900.795 kb on + strand, within CA264_08220 at 1900.796 kb on - strand, within CA264_08220 at 1900.815 kb on - strand, within CA264_08220 at 1900.878 kb on - strand, within CA264_08220 at 1900.937 kb on + strand, within CA264_08220 at 1900.996 kb on + strand, within CA264_08220 at 1901.077 kb on - strand, within CA264_08220 at 1901.176 kb on + strand, within CA264_08220 at 1901.177 kb on - strand, within CA264_08220 at 1901.177 kb on - strand, within CA264_08220 at 1901.217 kb on + strand at 1901.218 kb on - strand at 1901.219 kb on + strand at 1901.219 kb on + strand at 1901.220 kb on - strand at 1901.220 kb on - strand at 1901.220 kb on - strand at 1901.251 kb on + strand at 1901.252 kb on - strand at 1901.254 kb on + strand at 1901.255 kb on - strand at 1901.255 kb on - strand at 1901.268 kb on + strand at 1901.269 kb on - strand at 1901.283 kb on - strand at 1901.287 kb on + strand at 1901.295 kb on - strand at 1901.295 kb on - strand at 1901.295 kb on - strand at 1901.297 kb on - strand at 1901.297 kb on - strand at 1901.326 kb on + strand at 1901.329 kb on - strand at 1901.389 kb on + strand at 1901.396 kb on - strand at 1901.424 kb on - strand at 1901.429 kb on + strand at 1901.472 kb on - strand at 1901.473 kb on + strand at 1901.474 kb on - strand at 1901.485 kb on + strand at 1901.486 kb on - strand at 1901.504 kb on - strand at 1901.512 kb on - strand at 1901.530 kb on + strand at 1901.634 kb on + strand at 1901.652 kb on - strand, within CA264_08225 at 1901.657 kb on + strand, within CA264_08225 at 1901.657 kb on + strand, within CA264_08225 at 1901.657 kb on + strand, within CA264_08225 at 1901.658 kb on - strand, within CA264_08225 at 1901.658 kb on - strand, within CA264_08225 at 1901.770 kb on + strand, within CA264_08225 at 1901.817 kb on - strand, within CA264_08225 at 1901.896 kb on + strand, within CA264_08225 at 1901.897 kb on - strand, within CA264_08225 at 1901.904 kb on + strand, within CA264_08225 at 1901.938 kb on + strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1902.038 kb on + strand, within CA264_08225 at 1902.079 kb on - strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.182 kb on - strand, within CA264_08225 at 1902.182 kb on - strand, within CA264_08225 at 1902.184 kb on - strand, within CA264_08225 at 1902.196 kb on + strand, within CA264_08225 at 1902.209 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.232 kb on - strand, within CA264_08225 at 1902.233 kb on + strand, within CA264_08225 at 1902.234 kb on - strand, within CA264_08225 at 1902.266 kb on - strand, within CA264_08225 at 1902.364 kb on - strand, within CA264_08225 at 1902.394 kb on + strand, within CA264_08225 at 1902.394 kb on + strand, within CA264_08225 at 1902.395 kb on - strand, within CA264_08225 at 1902.450 kb on - strand at 1902.505 kb on + strand at 1902.523 kb on + strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.562 kb on - strand at 1902.562 kb on - strand at 1902.622 kb on - strand at 1902.628 kb on - strand at 1902.646 kb on + strand at 1902.647 kb on - strand at 1902.653 kb on - strand at 1902.693 kb on + strand at 1902.693 kb on + strand at 1902.694 kb on - strand at 1902.694 kb on - strand at 1902.699 kb on - strand at 1902.700 kb on + strand at 1902.700 kb on + strand at 1902.701 kb on - strand at 1902.738 kb on - strand at 1902.767 kb on - strand, within CA264_08230 at 1902.811 kb on - strand, within CA264_08230 at 1902.811 kb on - strand, within CA264_08230 at 1902.995 kb on - strand, within CA264_08230 at 1903.124 kb on + strand, within CA264_08230 at 1903.124 kb on + strand, within CA264_08230 at 1903.151 kb on + strand, within CA264_08230 at 1903.152 kb on - strand, within CA264_08230 at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.204 kb on - strand at 1903.218 kb on - strand at 1903.249 kb on + strand at 1903.309 kb on + strand at 1903.330 kb on + strand at 1903.331 kb on - strand at 1903.331 kb on - strand at 1903.331 kb on - strand at 1903.339 kb on - strand at 1903.497 kb on + strand at 1903.497 kb on + strand at 1903.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,900,585 - CA264_08220 0.15 +1.6 1,900,590 - CA264_08220 0.15 +0.7 1,900,590 - CA264_08220 0.15 -0.2 1,900,590 - CA264_08220 0.15 -0.5 1,900,613 - CA264_08220 0.18 +0.4 1,900,613 - CA264_08220 0.18 -0.6 1,900,702 + CA264_08220 0.29 -0.4 1,900,795 + CA264_08220 0.40 +0.2 1,900,796 - CA264_08220 0.41 +0.5 1,900,815 - CA264_08220 0.43 -0.7 1,900,878 - CA264_08220 0.51 +1.2 1,900,937 + CA264_08220 0.58 -0.1 1,900,996 + CA264_08220 0.65 +1.7 1,901,077 - CA264_08220 0.75 +0.5 1,901,176 + CA264_08220 0.88 -0.2 1,901,177 - CA264_08220 0.88 +0.4 1,901,177 - CA264_08220 0.88 +0.2 1,901,217 + +0.5 1,901,218 - +0.6 1,901,219 + -1.1 1,901,219 + +0.8 1,901,220 - +1.1 1,901,220 - +2.6 1,901,220 - +1.0 1,901,251 + +1.0 1,901,252 - +0.2 1,901,254 + +0.4 1,901,255 - -0.1 1,901,255 - -0.2 1,901,268 + +0.2 1,901,269 - -0.5 1,901,283 - +1.8 1,901,287 + -0.5 1,901,295 - +0.4 1,901,295 - +0.8 1,901,295 - -0.2 1,901,297 - +0.6 1,901,297 - -0.6 1,901,326 + -0.4 1,901,329 - +0.5 1,901,389 + -0.1 1,901,396 - +0.3 1,901,424 - -0.3 1,901,429 + +0.4 1,901,472 - +0.0 1,901,473 + +0.1 1,901,474 - +1.2 1,901,485 + +1.3 1,901,486 - -0.6 1,901,504 - +0.7 1,901,512 - +0.4 1,901,530 + -1.2 1,901,634 + -0.3 1,901,652 - CA264_08225 0.10 -0.5 1,901,657 + CA264_08225 0.11 +0.0 1,901,657 + CA264_08225 0.11 -0.4 1,901,657 + CA264_08225 0.11 +0.3 1,901,658 - CA264_08225 0.11 +0.6 1,901,658 - CA264_08225 0.11 +1.1 1,901,770 + CA264_08225 0.23 -0.2 1,901,817 - CA264_08225 0.28 +0.7 1,901,896 + CA264_08225 0.36 -0.1 1,901,897 - CA264_08225 0.36 +0.5 1,901,904 + CA264_08225 0.37 -0.1 1,901,938 + CA264_08225 0.40 -1.0 1,901,939 - CA264_08225 0.40 -0.2 1,901,939 - CA264_08225 0.40 -0.7 1,901,939 - CA264_08225 0.40 +0.3 1,902,038 + CA264_08225 0.51 -1.7 1,902,079 - CA264_08225 0.55 +0.3 1,902,181 + CA264_08225 0.66 +0.2 1,902,181 + CA264_08225 0.66 -1.0 1,902,181 + CA264_08225 0.66 +0.1 1,902,181 + CA264_08225 0.66 +0.3 1,902,182 - CA264_08225 0.66 +4.3 1,902,182 - CA264_08225 0.66 +0.8 1,902,184 - CA264_08225 0.66 +0.5 1,902,196 + CA264_08225 0.67 +0.6 1,902,209 + CA264_08225 0.69 +2.0 1,902,231 + CA264_08225 0.71 -0.5 1,902,231 + CA264_08225 0.71 -0.9 1,902,231 + CA264_08225 0.71 -0.1 1,902,231 + CA264_08225 0.71 +0.1 1,902,232 - CA264_08225 0.71 -0.5 1,902,233 + CA264_08225 0.71 +0.7 1,902,234 - CA264_08225 0.71 +1.3 1,902,266 - CA264_08225 0.75 +0.6 1,902,364 - CA264_08225 0.85 +0.1 1,902,394 + CA264_08225 0.88 -0.4 1,902,394 + CA264_08225 0.88 -0.6 1,902,395 - CA264_08225 0.88 +1.1 1,902,450 - +1.5 1,902,505 + -1.4 1,902,523 + -0.5 1,902,524 - -0.1 1,902,524 - -0.6 1,902,524 - +0.1 1,902,524 - +2.6 1,902,562 - +1.3 1,902,562 - +0.5 1,902,622 - -1.0 1,902,628 - +0.0 1,902,646 + -0.6 1,902,647 - +0.1 1,902,653 - +0.5 1,902,693 + +0.2 1,902,693 + +0.6 1,902,694 - +0.6 1,902,694 - -0.1 1,902,699 - +0.1 1,902,700 + +1.0 1,902,700 + -1.1 1,902,701 - -2.0 1,902,738 - +0.3 1,902,767 - CA264_08230 0.14 +0.1 1,902,811 - CA264_08230 0.23 -0.1 1,902,811 - CA264_08230 0.23 -0.2 1,902,995 - CA264_08230 0.57 -0.1 1,903,124 + CA264_08230 0.81 +1.0 1,903,124 + CA264_08230 0.81 +1.9 1,903,151 + CA264_08230 0.86 +1.8 1,903,152 - CA264_08230 0.87 -2.4 1,903,203 + -0.2 1,903,203 + +0.3 1,903,203 + +2.0 1,903,203 + +0.1 1,903,203 + +0.7 1,903,204 - +0.4 1,903,218 - +0.1 1,903,249 + +1.8 1,903,309 + +0.4 1,903,330 + +0.2 1,903,331 - +1.2 1,903,331 - +1.0 1,903,331 - -0.3 1,903,339 - +0.1 1,903,497 + +0.4 1,903,497 + -2.8 1,903,498 - -1.9
Or see this region's nucleotide sequence