Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08065

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08060 and CA264_08065 are separated by 185 nucleotidesCA264_08065 and CA264_08070 are separated by 107 nucleotides CA264_08060: CA264_08060 - two-component sensor histidine kinase, at 1,860,920 to 1,862,245 _08060 CA264_08065: CA264_08065 - DNA polymerase III subunit beta, at 1,862,431 to 1,863,555 _08065 CA264_08070: CA264_08070 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 1,863,663 to 1,865,354 _08070 Position (kb) 1862 1863 1864Strain fitness (log2 ratio) -2 -1 0 1 2at 1861.578 kb on - strand, within CA264_08060at 1861.669 kb on - strand, within CA264_08060at 1861.700 kb on + strand, within CA264_08060at 1861.780 kb on + strand, within CA264_08060at 1861.780 kb on + strand, within CA264_08060at 1861.841 kb on + strand, within CA264_08060at 1862.040 kb on + strand, within CA264_08060at 1862.041 kb on - strand, within CA264_08060at 1862.046 kb on + strand, within CA264_08060at 1862.046 kb on + strand, within CA264_08060at 1862.050 kb on - strand, within CA264_08060at 1862.077 kb on + strand, within CA264_08060at 1862.229 kb on + strandat 1862.272 kb on - strandat 1862.274 kb on - strandat 1862.274 kb on - strandat 1862.336 kb on - strandat 1862.438 kb on + strandat 1862.438 kb on + strandat 1862.438 kb on + strandat 1862.439 kb on - strandat 1862.439 kb on - strandat 1863.563 kb on - strandat 1863.567 kb on - strandat 1863.574 kb on + strandat 1863.648 kb on + strandat 1863.649 kb on - strandat 1863.650 kb on + strandat 1863.658 kb on + strandat 1863.659 kb on - strandat 1863.659 kb on - strandat 1863.697 kb on + strandat 1863.854 kb on - strand, within CA264_08070at 1864.366 kb on + strand, within CA264_08070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,861,578 - CA264_08060 0.50 +1.1
1,861,669 - CA264_08060 0.56 -0.2
1,861,700 + CA264_08060 0.59 -1.2
1,861,780 + CA264_08060 0.65 -0.9
1,861,780 + CA264_08060 0.65 -1.3
1,861,841 + CA264_08060 0.69 +1.6
1,862,040 + CA264_08060 0.84 +0.2
1,862,041 - CA264_08060 0.85 -0.3
1,862,046 + CA264_08060 0.85 +0.0
1,862,046 + CA264_08060 0.85 -0.5
1,862,050 - CA264_08060 0.85 -0.1
1,862,077 + CA264_08060 0.87 -0.0
1,862,229 + -0.3
1,862,272 - -1.7
1,862,274 - +0.1
1,862,274 - -0.6
1,862,336 - -0.9
1,862,438 + -0.2
1,862,438 + -1.4
1,862,438 + -0.6
1,862,439 - -0.1
1,862,439 - -0.8
1,863,563 - +1.0
1,863,567 - +0.9
1,863,574 + +0.2
1,863,648 + -0.8
1,863,649 - -0.6
1,863,650 + +0.5
1,863,658 + -1.5
1,863,659 - +2.0
1,863,659 - -2.2
1,863,697 + -0.4
1,863,854 - CA264_08070 0.11 +0.0
1,864,366 + CA264_08070 0.42 +0.4

Or see this region's nucleotide sequence