Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07575

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07565 and CA264_07570 are separated by 82 nucleotidesCA264_07570 and CA264_07575 are separated by 168 nucleotidesCA264_07575 and CA264_07580 are separated by 16 nucleotides CA264_07565: CA264_07565 - four-helix bundle copper-binding protein, at 1,755,104 to 1,755,439 _07565 CA264_07570: CA264_07570 - hypothetical protein, at 1,755,522 to 1,755,854 _07570 CA264_07575: CA264_07575 - agmatinase, at 1,756,023 to 1,757,093 _07575 CA264_07580: CA264_07580 - spermidine synthase, at 1,757,110 to 1,758,417 _07580 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1 2at 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.067 kb on - strandat 1755.082 kb on + strandat 1755.098 kb on - strandat 1755.223 kb on + strand, within CA264_07565at 1755.249 kb on + strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.443 kb on - strandat 1755.450 kb on - strandat 1755.451 kb on + strandat 1755.452 kb on - strandat 1755.458 kb on - strandat 1755.476 kb on + strandat 1755.537 kb on + strandat 1755.537 kb on + strandat 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.780 kb on - strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.845 kb on + strandat 1755.846 kb on - strandat 1755.873 kb on - strandat 1755.875 kb on - strandat 1755.876 kb on + strandat 1755.876 kb on + strandat 1755.940 kb on - strandat 1757.111 kb on + strandat 1757.202 kb on - strandat 1757.202 kb on - strandat 1757.312 kb on + strand, within CA264_07580at 1757.370 kb on - strand, within CA264_07580at 1757.378 kb on + strand, within CA264_07580at 1757.472 kb on - strand, within CA264_07580at 1757.540 kb on + strand, within CA264_07580at 1757.567 kb on + strand, within CA264_07580at 1757.724 kb on + strand, within CA264_07580at 1757.807 kb on + strand, within CA264_07580at 1757.808 kb on - strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.814 kb on - strand, within CA264_07580at 1757.900 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1758.011 kb on - strand, within CA264_07580at 1758.013 kb on - strand, within CA264_07580at 1758.018 kb on + strand, within CA264_07580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,755,048 + -1.5
1,755,048 + +0.3
1,755,048 + -0.8
1,755,049 - -0.3
1,755,049 - -0.5
1,755,049 - +2.1
1,755,049 - +0.7
1,755,067 - +0.2
1,755,082 + +1.3
1,755,098 - -1.2
1,755,223 + CA264_07565 0.35 -0.2
1,755,249 + CA264_07565 0.43 +0.7
1,755,357 - CA264_07565 0.75 -0.4
1,755,357 - CA264_07565 0.75 -1.4
1,755,443 - +0.3
1,755,450 - -0.3
1,755,451 + -1.2
1,755,452 - +1.7
1,755,458 - -1.5
1,755,476 + -0.3
1,755,537 + -0.8
1,755,537 + -0.7
1,755,750 + CA264_07570 0.68 +1.4
1,755,750 + CA264_07570 0.68 +0.6
1,755,750 + CA264_07570 0.68 -0.7
1,755,779 + CA264_07570 0.77 +1.4
1,755,779 + CA264_07570 0.77 +0.4
1,755,780 - CA264_07570 0.77 -1.2
1,755,799 + CA264_07570 0.83 +0.8
1,755,799 + CA264_07570 0.83 +0.7
1,755,845 + -0.3
1,755,846 - +2.4
1,755,873 - +0.4
1,755,875 - +0.5
1,755,876 + -0.5
1,755,876 + -0.7
1,755,940 - +1.1
1,757,111 + -0.8
1,757,202 - -1.0
1,757,202 - -1.9
1,757,312 + CA264_07580 0.15 -0.2
1,757,370 - CA264_07580 0.20 -1.3
1,757,378 + CA264_07580 0.20 -1.5
1,757,472 - CA264_07580 0.28 +1.9
1,757,540 + CA264_07580 0.33 -0.2
1,757,567 + CA264_07580 0.35 -0.7
1,757,724 + CA264_07580 0.47 -0.3
1,757,807 + CA264_07580 0.53 -0.5
1,757,808 - CA264_07580 0.53 +1.5
1,757,813 + CA264_07580 0.54 +1.1
1,757,813 + CA264_07580 0.54 -0.8
1,757,813 + CA264_07580 0.54 -0.2
1,757,813 + CA264_07580 0.54 +2.6
1,757,814 - CA264_07580 0.54 +0.9
1,757,900 + CA264_07580 0.60 +1.5
1,757,918 + CA264_07580 0.62 -0.2
1,757,918 + CA264_07580 0.62 +0.1
1,758,011 - CA264_07580 0.69 -0.2
1,758,013 - CA264_07580 0.69 +0.4
1,758,018 + CA264_07580 0.69 +0.4

Or see this region's nucleotide sequence