Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07545

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07540 and CA264_07545 are separated by 96 nucleotidesCA264_07545 and CA264_07550 are separated by 181 nucleotides CA264_07540: CA264_07540 - hypothetical protein, at 1,746,611 to 1,749,013 _07540 CA264_07545: CA264_07545 - pirin family protein, at 1,749,110 to 1,749,829 _07545 CA264_07550: CA264_07550 - transcriptional regulator, at 1,750,011 to 1,750,787 _07550 Position (kb) 1749 1750Strain fitness (log2 ratio) -1 0 1 2 3at 1748.141 kb on - strand, within CA264_07540at 1748.141 kb on - strand, within CA264_07540at 1748.148 kb on - strand, within CA264_07540at 1748.454 kb on + strand, within CA264_07540at 1748.455 kb on - strand, within CA264_07540at 1748.613 kb on - strand, within CA264_07540at 1748.613 kb on - strand, within CA264_07540at 1748.707 kb on + strand, within CA264_07540at 1748.734 kb on - strand, within CA264_07540at 1748.749 kb on + strand, within CA264_07540at 1748.843 kb on + strandat 1748.846 kb on + strandat 1748.847 kb on - strandat 1748.848 kb on + strandat 1748.848 kb on + strandat 1748.848 kb on + strandat 1748.849 kb on - strandat 1748.849 kb on - strandat 1748.849 kb on - strandat 1748.874 kb on - strandat 1748.874 kb on - strandat 1748.879 kb on + strandat 1748.886 kb on + strandat 1748.886 kb on + strandat 1748.886 kb on + strandat 1748.910 kb on + strandat 1748.911 kb on - strandat 1749.060 kb on + strandat 1749.061 kb on - strandat 1749.261 kb on + strand, within CA264_07545at 1749.261 kb on + strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.283 kb on + strand, within CA264_07545at 1749.292 kb on + strand, within CA264_07545at 1749.386 kb on + strand, within CA264_07545at 1749.403 kb on + strand, within CA264_07545at 1749.442 kb on - strand, within CA264_07545at 1749.738 kb on + strand, within CA264_07545at 1749.739 kb on - strand, within CA264_07545at 1749.846 kb on - strandat 1749.862 kb on - strandat 1749.890 kb on + strandat 1749.945 kb on - strandat 1749.978 kb on + strandat 1750.018 kb on - strandat 1750.826 kb on - strandat 1750.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,748,141 - CA264_07540 0.64 +1.3
1,748,141 - CA264_07540 0.64 +1.2
1,748,148 - CA264_07540 0.64 +1.6
1,748,454 + CA264_07540 0.77 -0.6
1,748,455 - CA264_07540 0.77 +0.8
1,748,613 - CA264_07540 0.83 -0.0
1,748,613 - CA264_07540 0.83 +0.1
1,748,707 + CA264_07540 0.87 -0.1
1,748,734 - CA264_07540 0.88 -1.6
1,748,749 + CA264_07540 0.89 +1.1
1,748,843 + -1.0
1,748,846 + -0.7
1,748,847 - -0.1
1,748,848 + -0.5
1,748,848 + -1.2
1,748,848 + +0.4
1,748,849 - +0.3
1,748,849 - +0.7
1,748,849 - -1.3
1,748,874 - +0.4
1,748,874 - -0.0
1,748,879 + +2.3
1,748,886 + +2.8
1,748,886 + -0.3
1,748,886 + -0.3
1,748,910 + -1.0
1,748,911 - +0.5
1,749,060 + +0.4
1,749,061 - -0.2
1,749,261 + CA264_07545 0.21 +0.9
1,749,261 + CA264_07545 0.21 +0.2
1,749,262 - CA264_07545 0.21 -1.0
1,749,262 - CA264_07545 0.21 -0.7
1,749,262 - CA264_07545 0.21 -1.7
1,749,283 + CA264_07545 0.24 -1.4
1,749,292 + CA264_07545 0.25 -0.7
1,749,386 + CA264_07545 0.38 +2.1
1,749,403 + CA264_07545 0.41 +2.0
1,749,442 - CA264_07545 0.46 -0.6
1,749,738 + CA264_07545 0.87 +0.5
1,749,739 - CA264_07545 0.87 +0.5
1,749,846 - +1.2
1,749,862 - +1.6
1,749,890 + +0.7
1,749,945 - +1.2
1,749,978 + +0.1
1,750,018 - -0.4
1,750,826 - -1.6
1,750,828 - -0.4

Or see this region's nucleotide sequence