Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06845

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06840 and CA264_06845 overlap by 17 nucleotidesCA264_06845 and CA264_06850 are separated by 17 nucleotidesCA264_06850 and CA264_06855 are separated by 72 nucleotides CA264_06840: CA264_06840 - nitrous oxide reductase, at 1,581,871 to 1,583,224 _06840 CA264_06845: CA264_06845 - hypothetical protein, at 1,583,208 to 1,583,666 _06845 CA264_06850: CA264_06850 - hypothetical protein, at 1,583,684 to 1,584,280 _06850 CA264_06855: CA264_06855 - nitrous oxide reductase, at 1,584,353 to 1,586,380 _06855 Position (kb) 1583 1584Strain fitness (log2 ratio) -2 -1 0 1at 1582.399 kb on + strand, within CA264_06840at 1582.512 kb on + strand, within CA264_06840at 1582.512 kb on + strand, within CA264_06840at 1582.549 kb on + strand, within CA264_06840at 1582.549 kb on + strand, within CA264_06840at 1582.550 kb on - strand, within CA264_06840at 1582.550 kb on - strand, within CA264_06840at 1582.550 kb on - strand, within CA264_06840at 1582.554 kb on + strand, within CA264_06840at 1582.554 kb on + strand, within CA264_06840at 1582.555 kb on - strand, within CA264_06840at 1582.555 kb on - strand, within CA264_06840at 1582.560 kb on + strand, within CA264_06840at 1582.582 kb on + strand, within CA264_06840at 1582.582 kb on + strand, within CA264_06840at 1582.582 kb on + strand, within CA264_06840at 1582.583 kb on - strand, within CA264_06840at 1582.659 kb on - strand, within CA264_06840at 1582.695 kb on - strand, within CA264_06840at 1582.706 kb on - strand, within CA264_06840at 1582.706 kb on - strand, within CA264_06840at 1582.713 kb on + strand, within CA264_06840at 1582.767 kb on - strand, within CA264_06840at 1582.769 kb on + strand, within CA264_06840at 1582.853 kb on + strand, within CA264_06840at 1582.877 kb on + strand, within CA264_06840at 1582.877 kb on + strand, within CA264_06840at 1582.878 kb on - strand, within CA264_06840at 1582.899 kb on + strand, within CA264_06840at 1582.899 kb on + strand, within CA264_06840at 1582.941 kb on - strand, within CA264_06840at 1582.944 kb on + strand, within CA264_06840at 1582.964 kb on + strand, within CA264_06840at 1582.964 kb on + strand, within CA264_06840at 1582.999 kb on + strand, within CA264_06840at 1583.012 kb on + strand, within CA264_06840at 1583.021 kb on - strand, within CA264_06840at 1583.035 kb on - strand, within CA264_06840at 1583.067 kb on - strand, within CA264_06840at 1583.120 kb on - strandat 1583.139 kb on - strandat 1583.172 kb on - strandat 1583.189 kb on + strandat 1583.190 kb on - strandat 1583.190 kb on - strandat 1583.192 kb on - strandat 1583.396 kb on + strand, within CA264_06845at 1583.397 kb on - strand, within CA264_06845at 1583.405 kb on + strand, within CA264_06845at 1583.590 kb on - strand, within CA264_06845at 1583.590 kb on - strand, within CA264_06845at 1583.637 kb on + strandat 1583.638 kb on - strandat 1583.640 kb on - strandat 1583.657 kb on - strandat 1583.750 kb on + strand, within CA264_06850at 1583.750 kb on + strand, within CA264_06850at 1583.751 kb on - strand, within CA264_06850at 1583.752 kb on + strand, within CA264_06850at 1583.753 kb on - strand, within CA264_06850at 1583.766 kb on - strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.768 kb on - strand, within CA264_06850at 1583.771 kb on + strand, within CA264_06850at 1583.772 kb on - strand, within CA264_06850at 1583.773 kb on + strand, within CA264_06850at 1583.773 kb on + strand, within CA264_06850at 1583.774 kb on - strand, within CA264_06850at 1583.844 kb on + strand, within CA264_06850at 1583.863 kb on + strand, within CA264_06850at 1583.863 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.914 kb on - strand, within CA264_06850at 1583.921 kb on + strand, within CA264_06850at 1583.986 kb on + strand, within CA264_06850at 1584.015 kb on - strand, within CA264_06850at 1584.042 kb on + strand, within CA264_06850at 1584.043 kb on - strand, within CA264_06850at 1584.056 kb on - strand, within CA264_06850at 1584.090 kb on + strand, within CA264_06850at 1584.121 kb on + strand, within CA264_06850at 1584.124 kb on - strand, within CA264_06850at 1584.287 kb on - strandat 1584.299 kb on + strandat 1584.300 kb on - strandat 1584.416 kb on + strandat 1584.416 kb on + strandat 1584.416 kb on + strandat 1584.424 kb on + strandat 1584.424 kb on + strandat 1584.426 kb on + strandat 1584.427 kb on - strandat 1584.427 kb on - strandat 1584.427 kb on - strandat 1584.472 kb on - strandat 1584.472 kb on - strandat 1584.618 kb on + strand, within CA264_06855at 1584.620 kb on + strand, within CA264_06855at 1584.620 kb on + strand, within CA264_06855at 1584.638 kb on + strand, within CA264_06855at 1584.640 kb on + strand, within CA264_06855at 1584.640 kb on + strand, within CA264_06855

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,582,399 + CA264_06840 0.39 -0.3
1,582,512 + CA264_06840 0.47 +0.3
1,582,512 + CA264_06840 0.47 -0.4
1,582,549 + CA264_06840 0.50 +1.1
1,582,549 + CA264_06840 0.50 -0.0
1,582,550 - CA264_06840 0.50 -1.5
1,582,550 - CA264_06840 0.50 +0.8
1,582,550 - CA264_06840 0.50 -0.0
1,582,554 + CA264_06840 0.50 +0.9
1,582,554 + CA264_06840 0.50 -1.4
1,582,555 - CA264_06840 0.51 +0.4
1,582,555 - CA264_06840 0.51 -0.7
1,582,560 + CA264_06840 0.51 +0.4
1,582,582 + CA264_06840 0.53 -0.5
1,582,582 + CA264_06840 0.53 +0.3
1,582,582 + CA264_06840 0.53 +1.7
1,582,583 - CA264_06840 0.53 -0.9
1,582,659 - CA264_06840 0.58 -1.0
1,582,695 - CA264_06840 0.61 +0.0
1,582,706 - CA264_06840 0.62 +0.1
1,582,706 - CA264_06840 0.62 -1.1
1,582,713 + CA264_06840 0.62 -0.2
1,582,767 - CA264_06840 0.66 +0.2
1,582,769 + CA264_06840 0.66 +0.7
1,582,853 + CA264_06840 0.73 -0.9
1,582,877 + CA264_06840 0.74 -0.9
1,582,877 + CA264_06840 0.74 -0.0
1,582,878 - CA264_06840 0.74 -2.5
1,582,899 + CA264_06840 0.76 +0.8
1,582,899 + CA264_06840 0.76 -0.3
1,582,941 - CA264_06840 0.79 -0.1
1,582,944 + CA264_06840 0.79 +0.4
1,582,964 + CA264_06840 0.81 -0.3
1,582,964 + CA264_06840 0.81 +0.9
1,582,999 + CA264_06840 0.83 -1.3
1,583,012 + CA264_06840 0.84 +0.1
1,583,021 - CA264_06840 0.85 -2.1
1,583,035 - CA264_06840 0.86 +1.4
1,583,067 - CA264_06840 0.88 -1.3
1,583,120 - -0.9
1,583,139 - +0.9
1,583,172 - -1.5
1,583,189 + -1.4
1,583,190 - -0.1
1,583,190 - +0.7
1,583,192 - -0.0
1,583,396 + CA264_06845 0.41 +0.8
1,583,397 - CA264_06845 0.41 +1.4
1,583,405 + CA264_06845 0.43 +0.6
1,583,590 - CA264_06845 0.83 +0.2
1,583,590 - CA264_06845 0.83 +1.4
1,583,637 + -0.7
1,583,638 - +1.0
1,583,640 - -0.0
1,583,657 - -0.0
1,583,750 + CA264_06850 0.11 +0.7
1,583,750 + CA264_06850 0.11 -0.5
1,583,751 - CA264_06850 0.11 -1.1
1,583,752 + CA264_06850 0.11 -1.0
1,583,753 - CA264_06850 0.12 -0.0
1,583,766 - CA264_06850 0.14 -0.6
1,583,767 + CA264_06850 0.14 +0.4
1,583,767 + CA264_06850 0.14 -0.9
1,583,767 + CA264_06850 0.14 -0.1
1,583,768 - CA264_06850 0.14 -0.4
1,583,771 + CA264_06850 0.15 -1.0
1,583,772 - CA264_06850 0.15 +0.4
1,583,773 + CA264_06850 0.15 -1.0
1,583,773 + CA264_06850 0.15 -0.6
1,583,774 - CA264_06850 0.15 -0.2
1,583,844 + CA264_06850 0.27 -1.1
1,583,863 + CA264_06850 0.30 -0.5
1,583,863 + CA264_06850 0.30 -1.2
1,583,913 + CA264_06850 0.38 -1.1
1,583,913 + CA264_06850 0.38 -0.5
1,583,913 + CA264_06850 0.38 -1.6
1,583,914 - CA264_06850 0.39 -0.5
1,583,921 + CA264_06850 0.40 +0.7
1,583,986 + CA264_06850 0.51 +1.1
1,584,015 - CA264_06850 0.55 -1.7
1,584,042 + CA264_06850 0.60 -0.4
1,584,043 - CA264_06850 0.60 +0.1
1,584,056 - CA264_06850 0.62 -0.7
1,584,090 + CA264_06850 0.68 -1.2
1,584,121 + CA264_06850 0.73 -0.0
1,584,124 - CA264_06850 0.74 +0.1
1,584,287 - -0.0
1,584,299 + -0.4
1,584,300 - +0.9
1,584,416 + -0.7
1,584,416 + -0.6
1,584,416 + -1.4
1,584,424 + -0.4
1,584,424 + +1.1
1,584,426 + -0.7
1,584,427 - +1.0
1,584,427 - -0.2
1,584,427 - -0.8
1,584,472 - -0.3
1,584,472 - +0.4
1,584,618 + CA264_06855 0.13 -0.4
1,584,620 + CA264_06855 0.13 +1.6
1,584,620 + CA264_06855 0.13 +1.1
1,584,638 + CA264_06855 0.14 -1.7
1,584,640 + CA264_06855 0.14 -0.5
1,584,640 + CA264_06855 0.14 -0.5

Or see this region's nucleotide sequence