Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06490 and CA264_06495 are separated by 226 nucleotides CA264_06495 and CA264_06500 are separated by 356 nucleotides
CA264_06490: CA264_06490 - DNA topoisomerase I, at 1,499,629 to 1,500,714
_06490
CA264_06495: CA264_06495 - hypothetical protein, at 1,500,941 to 1,501,345
_06495
CA264_06500: CA264_06500 - peptidase M48, at 1,501,702 to 1,502,535
_06500
Position (kb)
1500
1501
1502 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1499.959 kb on - strand, within CA264_06490 at 1499.988 kb on - strand, within CA264_06490 at 1499.988 kb on - strand, within CA264_06490 at 1499.994 kb on + strand, within CA264_06490 at 1499.995 kb on - strand, within CA264_06490 at 1500.010 kb on + strand, within CA264_06490 at 1500.010 kb on + strand, within CA264_06490 at 1500.011 kb on - strand, within CA264_06490 at 1500.041 kb on + strand, within CA264_06490 at 1500.042 kb on - strand, within CA264_06490 at 1500.042 kb on - strand, within CA264_06490 at 1500.050 kb on - strand, within CA264_06490 at 1500.145 kb on - strand, within CA264_06490 at 1500.151 kb on - strand, within CA264_06490 at 1500.201 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.318 kb on + strand, within CA264_06490 at 1500.390 kb on + strand, within CA264_06490 at 1500.423 kb on - strand, within CA264_06490 at 1500.496 kb on + strand, within CA264_06490 at 1500.497 kb on - strand, within CA264_06490 at 1500.580 kb on + strand, within CA264_06490 at 1500.587 kb on + strand, within CA264_06490 at 1500.627 kb on + strand at 1500.628 kb on - strand at 1500.630 kb on + strand at 1500.630 kb on + strand at 1500.630 kb on + strand at 1500.639 kb on + strand at 1500.639 kb on + strand at 1500.640 kb on - strand at 1500.640 kb on - strand at 1500.640 kb on - strand at 1500.640 kb on - strand at 1500.640 kb on - strand at 1500.647 kb on - strand at 1500.683 kb on + strand at 1500.683 kb on + strand at 1500.683 kb on + strand at 1500.684 kb on - strand at 1500.685 kb on + strand at 1500.685 kb on + strand at 1500.685 kb on + strand at 1500.686 kb on - strand at 1500.686 kb on - strand at 1500.695 kb on - strand at 1500.695 kb on - strand at 1500.754 kb on + strand at 1500.783 kb on + strand at 1500.783 kb on + strand at 1500.784 kb on - strand at 1500.810 kb on - strand at 1500.810 kb on - strand at 1500.813 kb on + strand at 1500.813 kb on + strand at 1500.814 kb on - strand at 1500.814 kb on - strand at 1500.878 kb on + strand at 1500.879 kb on - strand at 1500.926 kb on + strand at 1500.931 kb on - strand at 1500.938 kb on + strand at 1500.939 kb on - strand at 1501.045 kb on + strand, within CA264_06495 at 1501.045 kb on + strand, within CA264_06495 at 1501.046 kb on - strand, within CA264_06495 at 1501.046 kb on - strand, within CA264_06495 at 1501.048 kb on + strand, within CA264_06495 at 1501.049 kb on - strand, within CA264_06495 at 1501.120 kb on + strand, within CA264_06495 at 1501.181 kb on + strand, within CA264_06495 at 1501.201 kb on + strand, within CA264_06495 at 1501.206 kb on + strand, within CA264_06495 at 1501.206 kb on + strand, within CA264_06495 at 1501.207 kb on - strand, within CA264_06495 at 1501.297 kb on + strand, within CA264_06495 at 1501.330 kb on - strand at 1501.330 kb on - strand at 1501.431 kb on - strand at 1501.497 kb on - strand at 1501.628 kb on - strand at 1501.631 kb on + strand at 1501.631 kb on + strand at 1501.631 kb on + strand at 1501.631 kb on + strand at 1501.651 kb on + strand at 1501.652 kb on - strand at 1501.811 kb on + strand, within CA264_06500 at 1501.811 kb on + strand, within CA264_06500 at 1501.811 kb on + strand, within CA264_06500 at 1501.812 kb on - strand, within CA264_06500 at 1501.812 kb on - strand, within CA264_06500 at 1501.812 kb on - strand, within CA264_06500 at 1501.812 kb on - strand, within CA264_06500 at 1501.930 kb on - strand, within CA264_06500 at 1501.930 kb on - strand, within CA264_06500 at 1501.933 kb on - strand, within CA264_06500 at 1501.933 kb on - strand, within CA264_06500 at 1501.934 kb on + strand, within CA264_06500 at 1501.934 kb on + strand, within CA264_06500 at 1501.934 kb on + strand, within CA264_06500 at 1501.946 kb on + strand, within CA264_06500 at 1501.947 kb on - strand, within CA264_06500 at 1501.966 kb on + strand, within CA264_06500 at 1501.967 kb on - strand, within CA264_06500 at 1501.967 kb on - strand, within CA264_06500 at 1501.968 kb on + strand, within CA264_06500 at 1502.051 kb on - strand, within CA264_06500 at 1502.106 kb on - strand, within CA264_06500 at 1502.148 kb on - strand, within CA264_06500 at 1502.156 kb on + strand, within CA264_06500 at 1502.269 kb on - strand, within CA264_06500 at 1502.329 kb on + strand, within CA264_06500 at 1502.329 kb on + strand, within CA264_06500 at 1502.330 kb on - strand, within CA264_06500 at 1502.330 kb on - strand, within CA264_06500 at 1502.332 kb on + strand, within CA264_06500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,499,959 - CA264_06490 0.30 -0.2 1,499,988 - CA264_06490 0.33 -0.4 1,499,988 - CA264_06490 0.33 -0.8 1,499,994 + CA264_06490 0.34 -1.1 1,499,995 - CA264_06490 0.34 -0.0 1,500,010 + CA264_06490 0.35 -0.7 1,500,010 + CA264_06490 0.35 -0.6 1,500,011 - CA264_06490 0.35 +0.7 1,500,041 + CA264_06490 0.38 +0.2 1,500,042 - CA264_06490 0.38 -0.7 1,500,042 - CA264_06490 0.38 -0.4 1,500,050 - CA264_06490 0.39 -0.1 1,500,145 - CA264_06490 0.48 +0.7 1,500,151 - CA264_06490 0.48 -0.7 1,500,201 + CA264_06490 0.53 -1.4 1,500,318 + CA264_06490 0.63 -0.7 1,500,318 + CA264_06490 0.63 -0.2 1,500,318 + CA264_06490 0.63 -0.1 1,500,390 + CA264_06490 0.70 -1.1 1,500,423 - CA264_06490 0.73 -0.4 1,500,496 + CA264_06490 0.80 -0.0 1,500,497 - CA264_06490 0.80 +0.9 1,500,580 + CA264_06490 0.88 -0.8 1,500,587 + CA264_06490 0.88 -0.1 1,500,627 + -1.2 1,500,628 - +1.6 1,500,630 + +1.1 1,500,630 + -0.5 1,500,630 + -0.1 1,500,639 + -0.2 1,500,639 + +0.4 1,500,640 - +0.6 1,500,640 - -0.6 1,500,640 - -0.8 1,500,640 - -1.2 1,500,640 - -0.8 1,500,647 - +0.1 1,500,683 + -0.5 1,500,683 + -0.7 1,500,683 + -1.1 1,500,684 - -1.4 1,500,685 + +0.6 1,500,685 + -0.4 1,500,685 + -0.7 1,500,686 - -1.1 1,500,686 - +0.0 1,500,695 - +0.3 1,500,695 - +1.2 1,500,754 + -1.0 1,500,783 + -0.6 1,500,783 + +1.0 1,500,784 - -0.2 1,500,810 - +0.4 1,500,810 - +0.6 1,500,813 + -0.7 1,500,813 + +2.7 1,500,814 - -0.6 1,500,814 - -0.4 1,500,878 + -0.5 1,500,879 - -1.1 1,500,926 + -1.1 1,500,931 - -1.3 1,500,938 + -0.6 1,500,939 - -0.9 1,501,045 + CA264_06495 0.26 +0.4 1,501,045 + CA264_06495 0.26 +0.1 1,501,046 - CA264_06495 0.26 -1.0 1,501,046 - CA264_06495 0.26 -1.0 1,501,048 + CA264_06495 0.26 -1.8 1,501,049 - CA264_06495 0.27 -0.3 1,501,120 + CA264_06495 0.44 -0.9 1,501,181 + CA264_06495 0.59 +0.0 1,501,201 + CA264_06495 0.64 -0.4 1,501,206 + CA264_06495 0.65 -1.0 1,501,206 + CA264_06495 0.65 -0.2 1,501,207 - CA264_06495 0.66 -0.8 1,501,297 + CA264_06495 0.88 +0.6 1,501,330 - -0.3 1,501,330 - -0.5 1,501,431 - -0.5 1,501,497 - -0.5 1,501,628 - +3.2 1,501,631 + -1.0 1,501,631 + -1.5 1,501,631 + -0.6 1,501,631 + -1.0 1,501,651 + +0.1 1,501,652 - +0.2 1,501,811 + CA264_06500 0.13 -1.0 1,501,811 + CA264_06500 0.13 -0.8 1,501,811 + CA264_06500 0.13 -2.2 1,501,812 - CA264_06500 0.13 +1.6 1,501,812 - CA264_06500 0.13 -0.8 1,501,812 - CA264_06500 0.13 +0.7 1,501,812 - CA264_06500 0.13 +0.2 1,501,930 - CA264_06500 0.27 -0.5 1,501,930 - CA264_06500 0.27 +0.1 1,501,933 - CA264_06500 0.28 +0.3 1,501,933 - CA264_06500 0.28 -0.4 1,501,934 + CA264_06500 0.28 +0.0 1,501,934 + CA264_06500 0.28 +0.8 1,501,934 + CA264_06500 0.28 -0.9 1,501,946 + CA264_06500 0.29 +1.6 1,501,947 - CA264_06500 0.29 -1.0 1,501,966 + CA264_06500 0.32 -0.9 1,501,967 - CA264_06500 0.32 +2.4 1,501,967 - CA264_06500 0.32 -0.3 1,501,968 + CA264_06500 0.32 +0.4 1,502,051 - CA264_06500 0.42 +0.1 1,502,106 - CA264_06500 0.48 +0.9 1,502,148 - CA264_06500 0.53 -1.3 1,502,156 + CA264_06500 0.54 -0.6 1,502,269 - CA264_06500 0.68 +0.6 1,502,329 + CA264_06500 0.75 +0.9 1,502,329 + CA264_06500 0.75 -0.2 1,502,330 - CA264_06500 0.75 +1.1 1,502,330 - CA264_06500 0.75 -0.3 1,502,332 + CA264_06500 0.76 -1.2
Or see this region's nucleotide sequence