Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06015

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06005 and CA264_06010 overlap by 4 nucleotidesCA264_06010 and CA264_06015 are separated by 174 nucleotidesCA264_06015 and CA264_06020 are separated by 121 nucleotidesCA264_06020 and CA264_06025 are separated by 103 nucleotides CA264_06005: CA264_06005 - RES superfamily protein, at 1,403,431 to 1,403,895 _06005 CA264_06010: CA264_06010 - hypothetical protein, at 1,403,892 to 1,404,320 _06010 CA264_06015: CA264_06015 - hypothetical protein, at 1,404,495 to 1,405,223 _06015 CA264_06020: CA264_06020 - hypothetical protein, at 1,405,345 to 1,406,073 _06020 CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049 _06025 Position (kb) 1404 1405 1406Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1403.529 kb on + strand, within CA264_06005at 1403.529 kb on + strand, within CA264_06005at 1403.529 kb on + strand, within CA264_06005at 1403.529 kb on + strand, within CA264_06005at 1403.529 kb on + strand, within CA264_06005at 1403.530 kb on - strand, within CA264_06005at 1403.530 kb on - strand, within CA264_06005at 1403.531 kb on + strand, within CA264_06005at 1403.532 kb on - strand, within CA264_06005at 1403.532 kb on - strand, within CA264_06005at 1403.564 kb on - strand, within CA264_06005at 1403.580 kb on - strand, within CA264_06005at 1403.677 kb on - strand, within CA264_06005at 1403.677 kb on - strand, within CA264_06005at 1403.677 kb on - strand, within CA264_06005at 1403.715 kb on - strand, within CA264_06005at 1403.852 kb on - strandat 1403.864 kb on + strandat 1403.886 kb on - strandat 1403.887 kb on + strandat 1403.887 kb on + strandat 1403.887 kb on + strandat 1403.888 kb on - strandat 1403.888 kb on - strandat 1404.418 kb on + strandat 1404.418 kb on + strandat 1404.419 kb on - strandat 1404.419 kb on - strandat 1404.419 kb on - strandat 1404.419 kb on - strandat 1404.419 kb on - strandat 1404.419 kb on - strandat 1404.431 kb on + strandat 1404.431 kb on + strandat 1404.431 kb on + strandat 1404.431 kb on + strandat 1404.484 kb on - strandat 1404.491 kb on + strandat 1404.492 kb on - strandat 1404.492 kb on - strandat 1404.504 kb on + strandat 1404.504 kb on + strandat 1404.504 kb on + strandat 1404.504 kb on + strandat 1404.504 kb on + strandat 1404.505 kb on - strandat 1404.505 kb on - strandat 1404.506 kb on + strandat 1404.506 kb on + strandat 1404.506 kb on + strandat 1404.506 kb on + strandat 1404.509 kb on - strandat 1404.509 kb on - strandat 1404.600 kb on - strand, within CA264_06015at 1404.692 kb on + strand, within CA264_06015at 1404.692 kb on + strand, within CA264_06015at 1404.701 kb on + strand, within CA264_06015at 1404.720 kb on + strand, within CA264_06015at 1404.822 kb on + strand, within CA264_06015at 1404.832 kb on - strand, within CA264_06015at 1404.862 kb on - strand, within CA264_06015at 1404.960 kb on + strand, within CA264_06015at 1405.050 kb on + strand, within CA264_06015at 1405.051 kb on - strand, within CA264_06015at 1405.051 kb on - strand, within CA264_06015at 1405.054 kb on - strand, within CA264_06015at 1405.054 kb on - strand, within CA264_06015at 1405.054 kb on - strand, within CA264_06015at 1405.075 kb on - strand, within CA264_06015at 1405.078 kb on - strand, within CA264_06015at 1405.078 kb on - strand, within CA264_06015at 1405.078 kb on - strand, within CA264_06015at 1405.078 kb on - strand, within CA264_06015at 1405.090 kb on - strand, within CA264_06015at 1405.108 kb on - strand, within CA264_06015at 1405.158 kb on - strandat 1405.158 kb on - strandat 1405.158 kb on - strandat 1405.201 kb on - strandat 1405.222 kb on - strandat 1405.235 kb on + strandat 1405.236 kb on - strandat 1405.324 kb on - strandat 1405.324 kb on - strandat 1405.324 kb on - strandat 1405.345 kb on - strandat 1405.345 kb on - strandat 1405.359 kb on + strandat 1405.365 kb on + strandat 1405.367 kb on + strandat 1405.368 kb on - strandat 1405.368 kb on - strandat 1405.368 kb on - strandat 1405.542 kb on + strand, within CA264_06020at 1405.542 kb on + strand, within CA264_06020at 1405.543 kb on - strand, within CA264_06020at 1405.551 kb on + strand, within CA264_06020at 1405.786 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.839 kb on + strand, within CA264_06020at 1405.839 kb on + strand, within CA264_06020at 1405.840 kb on - strand, within CA264_06020at 1405.870 kb on + strand, within CA264_06020at 1405.870 kb on + strand, within CA264_06020at 1405.871 kb on - strand, within CA264_06020at 1405.933 kb on + strand, within CA264_06020at 1405.981 kb on + strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.983 kb on + strand, within CA264_06020at 1405.983 kb on + strand, within CA264_06020at 1405.984 kb on - strand, within CA264_06020at 1405.984 kb on - strand, within CA264_06020at 1406.146 kb on + strandat 1406.147 kb on - strandat 1406.176 kb on + strandat 1406.176 kb on + strandat 1406.177 kb on - strandat 1406.213 kb on + strandat 1406.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,403,529 + CA264_06005 0.21 -1.0
1,403,529 + CA264_06005 0.21 +0.5
1,403,529 + CA264_06005 0.21 -0.2
1,403,529 + CA264_06005 0.21 -0.5
1,403,529 + CA264_06005 0.21 -0.9
1,403,530 - CA264_06005 0.21 +1.1
1,403,530 - CA264_06005 0.21 +2.3
1,403,531 + CA264_06005 0.22 -1.6
1,403,532 - CA264_06005 0.22 -1.3
1,403,532 - CA264_06005 0.22 +0.3
1,403,564 - CA264_06005 0.29 +0.0
1,403,580 - CA264_06005 0.32 -0.1
1,403,677 - CA264_06005 0.53 +1.5
1,403,677 - CA264_06005 0.53 -1.0
1,403,677 - CA264_06005 0.53 -1.6
1,403,715 - CA264_06005 0.61 +0.0
1,403,852 - -0.7
1,403,864 + +0.9
1,403,886 - -0.9
1,403,887 + -0.4
1,403,887 + +0.1
1,403,887 + +0.7
1,403,888 - -0.4
1,403,888 - -0.6
1,404,418 + +2.2
1,404,418 + -0.4
1,404,419 - -1.0
1,404,419 - -1.4
1,404,419 - -0.6
1,404,419 - +0.2
1,404,419 - -1.2
1,404,419 - +0.0
1,404,431 + +1.0
1,404,431 + +0.5
1,404,431 + +1.2
1,404,431 + +0.5
1,404,484 - +2.7
1,404,491 + -0.9
1,404,492 - +0.9
1,404,492 - +0.3
1,404,504 + -1.0
1,404,504 + +0.7
1,404,504 + -1.1
1,404,504 + +0.2
1,404,504 + +0.2
1,404,505 - -0.2
1,404,505 - -1.7
1,404,506 + -0.9
1,404,506 + -0.3
1,404,506 + +1.0
1,404,506 + -2.5
1,404,509 - -1.2
1,404,509 - -2.4
1,404,600 - CA264_06015 0.14 -0.2
1,404,692 + CA264_06015 0.27 -1.5
1,404,692 + CA264_06015 0.27 +0.3
1,404,701 + CA264_06015 0.28 +0.1
1,404,720 + CA264_06015 0.31 +1.1
1,404,822 + CA264_06015 0.45 +0.1
1,404,832 - CA264_06015 0.46 +0.2
1,404,862 - CA264_06015 0.50 -2.2
1,404,960 + CA264_06015 0.64 -0.2
1,405,050 + CA264_06015 0.76 -0.2
1,405,051 - CA264_06015 0.76 +1.8
1,405,051 - CA264_06015 0.76 -0.6
1,405,054 - CA264_06015 0.77 -0.5
1,405,054 - CA264_06015 0.77 -0.6
1,405,054 - CA264_06015 0.77 -0.7
1,405,075 - CA264_06015 0.80 -0.3
1,405,078 - CA264_06015 0.80 -0.7
1,405,078 - CA264_06015 0.80 +1.0
1,405,078 - CA264_06015 0.80 -0.7
1,405,078 - CA264_06015 0.80 +0.6
1,405,090 - CA264_06015 0.82 +0.9
1,405,108 - CA264_06015 0.84 -0.5
1,405,158 - -0.4
1,405,158 - -2.9
1,405,158 - -1.5
1,405,201 - -0.1
1,405,222 - -0.5
1,405,235 + -1.0
1,405,236 - +0.4
1,405,324 - +0.1
1,405,324 - +1.1
1,405,324 - +0.5
1,405,345 - +0.2
1,405,345 - +0.5
1,405,359 + -0.4
1,405,365 + -0.1
1,405,367 + +1.7
1,405,368 - +0.2
1,405,368 - -1.1
1,405,368 - +0.0
1,405,542 + CA264_06020 0.27 +0.0
1,405,542 + CA264_06020 0.27 +0.1
1,405,543 - CA264_06020 0.27 +1.6
1,405,551 + CA264_06020 0.28 -0.8
1,405,786 + CA264_06020 0.60 +0.5
1,405,836 + CA264_06020 0.67 -0.5
1,405,836 + CA264_06020 0.67 +0.0
1,405,836 + CA264_06020 0.67 -1.1
1,405,839 + CA264_06020 0.68 +0.5
1,405,839 + CA264_06020 0.68 +0.5
1,405,840 - CA264_06020 0.68 -1.5
1,405,870 + CA264_06020 0.72 -2.2
1,405,870 + CA264_06020 0.72 -0.8
1,405,871 - CA264_06020 0.72 -0.5
1,405,933 + CA264_06020 0.81 -1.2
1,405,981 + CA264_06020 0.87 -1.3
1,405,982 - CA264_06020 0.87 -0.7
1,405,982 - CA264_06020 0.87 -0.0
1,405,982 - CA264_06020 0.87 -0.2
1,405,983 + CA264_06020 0.88 -0.1
1,405,983 + CA264_06020 0.88 -2.1
1,405,984 - CA264_06020 0.88 -0.8
1,405,984 - CA264_06020 0.88 +0.4
1,406,146 + +1.1
1,406,147 - -0.1
1,406,176 + -2.1
1,406,176 + +1.4
1,406,177 - -2.0
1,406,213 + +0.6
1,406,214 - +0.9

Or see this region's nucleotide sequence