Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05975

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05965 and CA264_05970 are separated by 77 nucleotidesCA264_05970 and CA264_05975 are separated by 268 nucleotidesCA264_05975 and CA264_05980 are separated by 207 nucleotides CA264_05965: CA264_05965 - N-acetylmuramoyl-L-alanine amidase, at 1,393,813 to 1,394,853 _05965 CA264_05970: CA264_05970 - hypothetical protein, at 1,394,931 to 1,395,317 _05970 CA264_05975: CA264_05975 - hypothetical protein, at 1,395,586 to 1,395,999 _05975 CA264_05980: CA264_05980 - cytochrome P450, at 1,396,207 to 1,397,478 _05980 Position (kb) 1395 1396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1394.630 kb on - strand, within CA264_05965at 1394.669 kb on + strand, within CA264_05965at 1394.670 kb on - strand, within CA264_05965at 1394.689 kb on + strand, within CA264_05965at 1394.690 kb on - strand, within CA264_05965at 1394.697 kb on + strand, within CA264_05965at 1394.701 kb on + strand, within CA264_05965at 1394.727 kb on - strand, within CA264_05965at 1394.820 kb on + strandat 1394.821 kb on - strandat 1394.830 kb on + strandat 1394.831 kb on - strandat 1394.833 kb on - strandat 1394.852 kb on - strandat 1394.852 kb on - strandat 1394.852 kb on - strandat 1394.858 kb on + strandat 1394.859 kb on - strandat 1394.862 kb on + strandat 1394.893 kb on + strandat 1394.932 kb on + strandat 1394.944 kb on + strandat 1394.950 kb on + strandat 1394.968 kb on - strandat 1394.970 kb on - strand, within CA264_05970at 1394.970 kb on - strand, within CA264_05970at 1395.083 kb on - strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.094 kb on + strand, within CA264_05970at 1395.199 kb on + strand, within CA264_05970at 1395.200 kb on - strand, within CA264_05970at 1395.206 kb on - strand, within CA264_05970at 1395.206 kb on - strand, within CA264_05970at 1395.250 kb on - strand, within CA264_05970at 1395.304 kb on - strandat 1395.311 kb on + strandat 1395.312 kb on - strandat 1395.429 kb on + strandat 1395.477 kb on + strandat 1395.495 kb on - strandat 1395.505 kb on + strandat 1395.532 kb on - strandat 1395.532 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.537 kb on + strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.547 kb on + strandat 1395.558 kb on - strandat 1395.572 kb on + strandat 1395.575 kb on + strandat 1395.575 kb on + strandat 1395.633 kb on + strand, within CA264_05975at 1395.633 kb on + strand, within CA264_05975at 1395.717 kb on + strand, within CA264_05975at 1395.717 kb on + strand, within CA264_05975at 1395.718 kb on - strand, within CA264_05975at 1395.718 kb on - strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.722 kb on - strand, within CA264_05975at 1395.722 kb on - strand, within CA264_05975at 1395.737 kb on + strand, within CA264_05975at 1395.737 kb on + strand, within CA264_05975at 1395.791 kb on + strand, within CA264_05975at 1395.878 kb on + strand, within CA264_05975at 1395.891 kb on + strand, within CA264_05975at 1395.984 kb on + strandat 1395.994 kb on - strandat 1395.997 kb on + strandat 1395.998 kb on - strandat 1395.998 kb on - strandat 1396.044 kb on - strandat 1396.135 kb on + strandat 1396.186 kb on - strandat 1396.202 kb on + strandat 1396.202 kb on + strandat 1396.203 kb on - strandat 1396.203 kb on - strandat 1396.203 kb on - strandat 1396.310 kb on + strandat 1396.424 kb on + strand, within CA264_05980at 1396.699 kb on + strand, within CA264_05980at 1396.700 kb on - strand, within CA264_05980at 1396.700 kb on - strand, within CA264_05980at 1396.702 kb on - strand, within CA264_05980at 1396.755 kb on - strand, within CA264_05980at 1396.933 kb on - strand, within CA264_05980at 1396.951 kb on + strand, within CA264_05980at 1396.951 kb on + strand, within CA264_05980at 1396.951 kb on + strand, within CA264_05980at 1396.951 kb on + strand, within CA264_05980at 1396.952 kb on - strand, within CA264_05980at 1396.952 kb on - strand, within CA264_05980at 1396.952 kb on - strand, within CA264_05980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,394,630 - CA264_05965 0.78 -1.1
1,394,669 + CA264_05965 0.82 -0.3
1,394,670 - CA264_05965 0.82 +0.6
1,394,689 + CA264_05965 0.84 -0.0
1,394,690 - CA264_05965 0.84 -0.3
1,394,697 + CA264_05965 0.85 +0.3
1,394,701 + CA264_05965 0.85 -1.2
1,394,727 - CA264_05965 0.88 -0.9
1,394,820 + -1.1
1,394,821 - +0.3
1,394,830 + +2.1
1,394,831 - -0.8
1,394,833 - -0.4
1,394,852 - -0.6
1,394,852 - -1.7
1,394,852 - -1.1
1,394,858 + -1.2
1,394,859 - +1.3
1,394,862 + +0.8
1,394,893 + -0.1
1,394,932 + -0.2
1,394,944 + +0.3
1,394,950 + -0.6
1,394,968 - -1.0
1,394,970 - CA264_05970 0.10 -0.6
1,394,970 - CA264_05970 0.10 -1.5
1,395,083 - CA264_05970 0.39 +1.7
1,395,090 + CA264_05970 0.41 -0.9
1,395,090 + CA264_05970 0.41 -0.4
1,395,090 + CA264_05970 0.41 -0.9
1,395,090 + CA264_05970 0.41 +1.8
1,395,090 + CA264_05970 0.41 -0.9
1,395,091 - CA264_05970 0.41 +0.0
1,395,091 - CA264_05970 0.41 -0.7
1,395,091 - CA264_05970 0.41 -0.1
1,395,094 + CA264_05970 0.42 +1.1
1,395,199 + CA264_05970 0.69 -0.3
1,395,200 - CA264_05970 0.70 -1.9
1,395,206 - CA264_05970 0.71 +1.7
1,395,206 - CA264_05970 0.71 +0.5
1,395,250 - CA264_05970 0.82 +0.6
1,395,304 - -1.8
1,395,311 + -0.6
1,395,312 - +0.1
1,395,429 + -0.8
1,395,477 + +0.6
1,395,495 - -0.3
1,395,505 + -1.1
1,395,532 - -1.4
1,395,532 - +0.7
1,395,535 - -0.1
1,395,535 - -3.1
1,395,535 - -0.1
1,395,535 - -1.3
1,395,537 + -1.4
1,395,538 - +0.0
1,395,538 - -0.7
1,395,538 - -1.6
1,395,538 - -1.1
1,395,538 - -0.2
1,395,547 + -0.7
1,395,558 - -0.7
1,395,572 + +0.9
1,395,575 + -1.1
1,395,575 + -0.1
1,395,633 + CA264_05975 0.11 -0.6
1,395,633 + CA264_05975 0.11 +0.2
1,395,717 + CA264_05975 0.32 -1.8
1,395,717 + CA264_05975 0.32 -0.5
1,395,718 - CA264_05975 0.32 +1.1
1,395,718 - CA264_05975 0.32 +0.9
1,395,721 + CA264_05975 0.33 -0.3
1,395,721 + CA264_05975 0.33 +0.8
1,395,721 + CA264_05975 0.33 +1.1
1,395,721 + CA264_05975 0.33 -2.0
1,395,721 + CA264_05975 0.33 -0.9
1,395,721 + CA264_05975 0.33 -1.5
1,395,721 + CA264_05975 0.33 -0.3
1,395,721 + CA264_05975 0.33 -1.3
1,395,722 - CA264_05975 0.33 -0.6
1,395,722 - CA264_05975 0.33 -0.1
1,395,737 + CA264_05975 0.36 -0.7
1,395,737 + CA264_05975 0.36 +0.4
1,395,791 + CA264_05975 0.50 -0.9
1,395,878 + CA264_05975 0.71 +1.1
1,395,891 + CA264_05975 0.74 +0.5
1,395,984 + +1.7
1,395,994 - -1.2
1,395,997 + -0.9
1,395,998 - -2.0
1,395,998 - -2.4
1,396,044 - +0.6
1,396,135 + -1.2
1,396,186 - -1.2
1,396,202 + -0.7
1,396,202 + -0.5
1,396,203 - -0.7
1,396,203 - +0.5
1,396,203 - -0.5
1,396,310 + -0.3
1,396,424 + CA264_05980 0.17 -0.2
1,396,699 + CA264_05980 0.39 -0.3
1,396,700 - CA264_05980 0.39 +0.1
1,396,700 - CA264_05980 0.39 -1.1
1,396,702 - CA264_05980 0.39 +0.0
1,396,755 - CA264_05980 0.43 +1.1
1,396,933 - CA264_05980 0.57 -0.9
1,396,951 + CA264_05980 0.58 +0.4
1,396,951 + CA264_05980 0.58 +0.1
1,396,951 + CA264_05980 0.58 -0.2
1,396,951 + CA264_05980 0.58 -0.5
1,396,952 - CA264_05980 0.59 -0.3
1,396,952 - CA264_05980 0.59 -0.7
1,396,952 - CA264_05980 0.59 -0.0

Or see this region's nucleotide sequence