Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05850

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05845 and CA264_05850 overlap by 59 nucleotidesCA264_05850 and CA264_05855 are separated by 135 nucleotidesCA264_05855 and CA264_05860 are separated by 219 nucleotides CA264_05845: CA264_05845 - ribonuclease, at 1,360,539 to 1,361,984 _05845 CA264_05850: CA264_05850 - hypothetical protein, at 1,361,926 to 1,362,693 _05850 CA264_05855: CA264_05855 - hypothetical protein, at 1,362,829 to 1,363,275 _05855 CA264_05860: CA264_05860 - serine protease, at 1,363,495 to 1,365,771 _05860 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -2 -1 0 1 2at 1360.926 kb on + strand, within CA264_05845at 1360.926 kb on + strand, within CA264_05845at 1360.927 kb on - strand, within CA264_05845at 1360.927 kb on - strand, within CA264_05845at 1360.927 kb on - strand, within CA264_05845at 1361.087 kb on + strand, within CA264_05845at 1361.087 kb on + strand, within CA264_05845at 1361.116 kb on + strand, within CA264_05845at 1361.136 kb on + strand, within CA264_05845at 1361.136 kb on + strand, within CA264_05845at 1361.180 kb on - strand, within CA264_05845at 1361.190 kb on + strand, within CA264_05845at 1361.203 kb on + strand, within CA264_05845at 1361.204 kb on - strand, within CA264_05845at 1361.292 kb on + strand, within CA264_05845at 1361.293 kb on - strand, within CA264_05845at 1361.420 kb on - strand, within CA264_05845at 1361.487 kb on + strand, within CA264_05845at 1361.500 kb on - strand, within CA264_05845at 1361.548 kb on + strand, within CA264_05845at 1361.580 kb on + strand, within CA264_05845at 1361.610 kb on + strand, within CA264_05845at 1361.611 kb on - strand, within CA264_05845at 1361.611 kb on - strand, within CA264_05845at 1361.668 kb on + strand, within CA264_05845at 1361.669 kb on - strand, within CA264_05845at 1361.703 kb on + strand, within CA264_05845at 1361.704 kb on - strand, within CA264_05845at 1361.704 kb on - strand, within CA264_05845at 1361.835 kb on + strand, within CA264_05845at 1361.836 kb on - strand, within CA264_05845at 1361.836 kb on - strand, within CA264_05845at 1361.883 kb on + strandat 1361.928 kb on - strandat 1361.982 kb on + strandat 1362.155 kb on + strand, within CA264_05850at 1362.343 kb on - strand, within CA264_05850at 1362.421 kb on - strand, within CA264_05850at 1362.421 kb on - strand, within CA264_05850at 1362.486 kb on - strand, within CA264_05850at 1362.491 kb on + strand, within CA264_05850at 1362.492 kb on - strand, within CA264_05850at 1362.558 kb on - strand, within CA264_05850at 1362.608 kb on - strand, within CA264_05850at 1362.655 kb on - strandat 1362.704 kb on - strandat 1362.726 kb on - strandat 1362.726 kb on - strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.763 kb on + strandat 1362.803 kb on + strandat 1362.803 kb on + strandat 1362.803 kb on + strandat 1362.807 kb on + strandat 1362.813 kb on + strandat 1362.819 kb on + strandat 1362.820 kb on - strandat 1362.826 kb on + strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.828 kb on + strandat 1362.829 kb on - strandat 1362.918 kb on + strand, within CA264_05855at 1362.974 kb on + strand, within CA264_05855at 1362.974 kb on + strand, within CA264_05855at 1362.975 kb on - strand, within CA264_05855at 1363.061 kb on - strand, within CA264_05855at 1363.061 kb on - strand, within CA264_05855at 1363.106 kb on + strand, within CA264_05855at 1363.107 kb on - strand, within CA264_05855at 1363.112 kb on - strand, within CA264_05855at 1363.112 kb on - strand, within CA264_05855at 1363.147 kb on - strand, within CA264_05855at 1363.147 kb on - strand, within CA264_05855at 1363.245 kb on + strandat 1363.246 kb on - strandat 1363.246 kb on - strandat 1363.274 kb on - strandat 1363.283 kb on + strandat 1363.283 kb on + strandat 1363.283 kb on + strandat 1363.284 kb on - strandat 1363.284 kb on - strandat 1363.284 kb on - strandat 1363.285 kb on + strandat 1363.301 kb on - strandat 1363.306 kb on - strandat 1363.311 kb on + strandat 1363.359 kb on - strandat 1363.359 kb on - strandat 1363.428 kb on + strandat 1363.429 kb on - strandat 1363.450 kb on + strandat 1363.455 kb on - strandat 1363.480 kb on + strandat 1363.481 kb on - strandat 1363.511 kb on + strandat 1363.512 kb on - strandat 1363.512 kb on - strandat 1363.657 kb on + strandat 1363.657 kb on + strandat 1363.658 kb on - strandat 1363.658 kb on - strandat 1363.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,360,926 + CA264_05845 0.27 +0.9
1,360,926 + CA264_05845 0.27 +1.6
1,360,927 - CA264_05845 0.27 +1.4
1,360,927 - CA264_05845 0.27 +1.1
1,360,927 - CA264_05845 0.27 +0.9
1,361,087 + CA264_05845 0.38 -0.0
1,361,087 + CA264_05845 0.38 +0.1
1,361,116 + CA264_05845 0.40 +1.7
1,361,136 + CA264_05845 0.41 -0.3
1,361,136 + CA264_05845 0.41 -1.1
1,361,180 - CA264_05845 0.44 +0.5
1,361,190 + CA264_05845 0.45 -1.5
1,361,203 + CA264_05845 0.46 +0.9
1,361,204 - CA264_05845 0.46 -0.8
1,361,292 + CA264_05845 0.52 -0.2
1,361,293 - CA264_05845 0.52 -0.4
1,361,420 - CA264_05845 0.61 +0.2
1,361,487 + CA264_05845 0.66 +0.4
1,361,500 - CA264_05845 0.66 -1.4
1,361,548 + CA264_05845 0.70 -1.4
1,361,580 + CA264_05845 0.72 +0.2
1,361,610 + CA264_05845 0.74 -0.8
1,361,611 - CA264_05845 0.74 +0.4
1,361,611 - CA264_05845 0.74 -0.1
1,361,668 + CA264_05845 0.78 +0.2
1,361,669 - CA264_05845 0.78 -0.4
1,361,703 + CA264_05845 0.80 -0.2
1,361,704 - CA264_05845 0.81 +0.9
1,361,704 - CA264_05845 0.81 -0.0
1,361,835 + CA264_05845 0.90 -0.5
1,361,836 - CA264_05845 0.90 +0.0
1,361,836 - CA264_05845 0.90 +0.9
1,361,883 + -0.6
1,361,928 - +0.3
1,361,982 + +0.5
1,362,155 + CA264_05850 0.30 -1.8
1,362,343 - CA264_05850 0.54 +0.0
1,362,421 - CA264_05850 0.64 -1.6
1,362,421 - CA264_05850 0.64 -0.3
1,362,486 - CA264_05850 0.73 +0.5
1,362,491 + CA264_05850 0.74 +1.1
1,362,492 - CA264_05850 0.74 +0.2
1,362,558 - CA264_05850 0.82 -0.3
1,362,608 - CA264_05850 0.89 -1.2
1,362,655 - +0.5
1,362,704 - +1.4
1,362,726 - -1.5
1,362,726 - +0.3
1,362,734 + -1.3
1,362,734 + +1.4
1,362,734 + -1.4
1,362,734 + -0.9
1,362,763 + -2.2
1,362,803 + +0.2
1,362,803 + -0.4
1,362,803 + +2.2
1,362,807 + -0.6
1,362,813 + -1.0
1,362,819 + +0.8
1,362,820 - -0.2
1,362,826 + +1.7
1,362,827 - +1.4
1,362,827 - -0.0
1,362,827 - -0.6
1,362,827 - -0.6
1,362,828 + +1.7
1,362,829 - +0.4
1,362,918 + CA264_05855 0.20 -0.8
1,362,974 + CA264_05855 0.32 +0.0
1,362,974 + CA264_05855 0.32 -0.5
1,362,975 - CA264_05855 0.33 +0.7
1,363,061 - CA264_05855 0.52 -0.8
1,363,061 - CA264_05855 0.52 +0.4
1,363,106 + CA264_05855 0.62 +1.0
1,363,107 - CA264_05855 0.62 +0.9
1,363,112 - CA264_05855 0.63 -2.4
1,363,112 - CA264_05855 0.63 +0.7
1,363,147 - CA264_05855 0.71 +1.3
1,363,147 - CA264_05855 0.71 -0.5
1,363,245 + -0.3
1,363,246 - -1.1
1,363,246 - +0.7
1,363,274 - -0.4
1,363,283 + -0.2
1,363,283 + +0.3
1,363,283 + -1.4
1,363,284 - -0.3
1,363,284 - +0.3
1,363,284 - +0.6
1,363,285 + +1.3
1,363,301 - +0.1
1,363,306 - -1.0
1,363,311 + -0.4
1,363,359 - +1.3
1,363,359 - -1.0
1,363,428 + -0.2
1,363,429 - -0.5
1,363,450 + +0.2
1,363,455 - -0.2
1,363,480 + -0.1
1,363,481 - -0.1
1,363,511 + +0.6
1,363,512 - -0.8
1,363,512 - -0.6
1,363,657 + -0.4
1,363,657 + -0.4
1,363,658 - -0.4
1,363,658 - -0.2
1,363,658 - +0.4

Or see this region's nucleotide sequence