Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05615

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05610 and CA264_05615 are separated by 48 nucleotidesCA264_05615 and CA264_05620 are separated by 96 nucleotides CA264_05610: CA264_05610 - rRNA methyltransferase, at 1,304,255 to 1,305,655 _05610 CA264_05615: CA264_05615 - NUDIX hydrolase, at 1,305,704 to 1,306,090 _05615 CA264_05620: CA264_05620 - hypothetical protein, at 1,306,187 to 1,307,167 _05620 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1at 1304.733 kb on + strand, within CA264_05610at 1304.733 kb on + strand, within CA264_05610at 1304.801 kb on - strand, within CA264_05610at 1304.892 kb on - strand, within CA264_05610at 1304.903 kb on + strand, within CA264_05610at 1304.903 kb on + strand, within CA264_05610at 1304.904 kb on - strand, within CA264_05610at 1304.904 kb on - strand, within CA264_05610at 1304.982 kb on + strand, within CA264_05610at 1305.241 kb on + strand, within CA264_05610at 1305.242 kb on - strand, within CA264_05610at 1305.296 kb on + strand, within CA264_05610at 1305.371 kb on + strand, within CA264_05610at 1305.423 kb on + strand, within CA264_05610at 1305.424 kb on - strand, within CA264_05610at 1305.424 kb on - strand, within CA264_05610at 1305.424 kb on - strand, within CA264_05610at 1305.424 kb on - strand, within CA264_05610at 1305.424 kb on - strand, within CA264_05610at 1305.726 kb on + strandat 1305.765 kb on + strand, within CA264_05615at 1305.765 kb on + strand, within CA264_05615at 1305.765 kb on + strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.766 kb on - strand, within CA264_05615at 1305.821 kb on + strand, within CA264_05615at 1305.849 kb on + strand, within CA264_05615at 1305.850 kb on - strand, within CA264_05615at 1305.854 kb on + strand, within CA264_05615at 1305.888 kb on - strand, within CA264_05615at 1305.929 kb on - strand, within CA264_05615at 1306.079 kb on + strandat 1306.079 kb on + strandat 1306.080 kb on - strandat 1306.080 kb on - strandat 1306.083 kb on - strandat 1306.109 kb on + strandat 1306.122 kb on - strandat 1306.148 kb on + strandat 1306.215 kb on + strandat 1306.215 kb on + strandat 1306.216 kb on - strandat 1306.223 kb on - strandat 1306.224 kb on + strandat 1306.244 kb on - strandat 1306.253 kb on + strandat 1306.273 kb on + strandat 1306.274 kb on - strandat 1306.484 kb on - strand, within CA264_05620at 1306.487 kb on + strand, within CA264_05620at 1306.539 kb on + strand, within CA264_05620at 1306.605 kb on + strand, within CA264_05620at 1306.633 kb on - strand, within CA264_05620at 1306.831 kb on - strand, within CA264_05620at 1306.847 kb on + strand, within CA264_05620at 1306.951 kb on - strand, within CA264_05620at 1306.951 kb on - strand, within CA264_05620at 1306.962 kb on + strand, within CA264_05620at 1307.030 kb on - strand, within CA264_05620at 1307.068 kb on - strand, within CA264_05620at 1307.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,304,733 + CA264_05610 0.34 +1.3
1,304,733 + CA264_05610 0.34 -0.3
1,304,801 - CA264_05610 0.39 +0.5
1,304,892 - CA264_05610 0.45 -1.5
1,304,903 + CA264_05610 0.46 -0.0
1,304,903 + CA264_05610 0.46 -0.9
1,304,904 - CA264_05610 0.46 -0.4
1,304,904 - CA264_05610 0.46 +0.9
1,304,982 + CA264_05610 0.52 +1.3
1,305,241 + CA264_05610 0.70 +0.1
1,305,242 - CA264_05610 0.70 +0.1
1,305,296 + CA264_05610 0.74 +0.7
1,305,371 + CA264_05610 0.80 +0.4
1,305,423 + CA264_05610 0.83 -1.2
1,305,424 - CA264_05610 0.83 +0.2
1,305,424 - CA264_05610 0.83 -1.7
1,305,424 - CA264_05610 0.83 -0.3
1,305,424 - CA264_05610 0.83 -0.1
1,305,424 - CA264_05610 0.83 -2.0
1,305,726 + -1.2
1,305,765 + CA264_05615 0.16 +0.5
1,305,765 + CA264_05615 0.16 -1.8
1,305,765 + CA264_05615 0.16 +0.4
1,305,766 - CA264_05615 0.16 +0.5
1,305,766 - CA264_05615 0.16 -0.6
1,305,766 - CA264_05615 0.16 -0.1
1,305,766 - CA264_05615 0.16 -0.7
1,305,766 - CA264_05615 0.16 -0.5
1,305,766 - CA264_05615 0.16 -0.3
1,305,821 + CA264_05615 0.30 -1.1
1,305,849 + CA264_05615 0.37 -0.8
1,305,850 - CA264_05615 0.38 +1.2
1,305,854 + CA264_05615 0.39 -0.4
1,305,888 - CA264_05615 0.48 +1.3
1,305,929 - CA264_05615 0.58 -0.8
1,306,079 + -0.5
1,306,079 + -0.4
1,306,080 - -1.1
1,306,080 - +0.5
1,306,083 - +0.3
1,306,109 + -0.7
1,306,122 - -0.7
1,306,148 + -0.2
1,306,215 + -1.0
1,306,215 + +0.3
1,306,216 - -0.2
1,306,223 - +1.4
1,306,224 + +0.7
1,306,244 - -1.1
1,306,253 + -0.9
1,306,273 + -1.5
1,306,274 - -0.6
1,306,484 - CA264_05620 0.30 -0.0
1,306,487 + CA264_05620 0.31 -0.2
1,306,539 + CA264_05620 0.36 -0.6
1,306,605 + CA264_05620 0.43 -0.6
1,306,633 - CA264_05620 0.45 -1.4
1,306,831 - CA264_05620 0.66 -0.7
1,306,847 + CA264_05620 0.67 -0.1
1,306,951 - CA264_05620 0.78 -1.6
1,306,951 - CA264_05620 0.78 -0.7
1,306,962 + CA264_05620 0.79 +0.7
1,307,030 - CA264_05620 0.86 -0.8
1,307,068 - CA264_05620 0.90 -0.9
1,307,078 + -0.9

Or see this region's nucleotide sequence