Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04285

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04280 and CA264_04285 are separated by 77 nucleotidesCA264_04285 and CA264_04290 are separated by 202 nucleotides CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112 _04280 CA264_04285: CA264_04285 - hypothetical protein, at 989,190 to 989,453 _04285 CA264_04290: CA264_04290 - ABC transporter permease, at 989,656 to 990,741 _04290 Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 988.210 kb on + strandat 988.250 kb on + strandat 988.307 kb on + strandat 988.342 kb on + strandat 988.343 kb on - strandat 988.343 kb on - strandat 988.344 kb on + strandat 988.345 kb on - strandat 988.348 kb on + strandat 988.348 kb on + strandat 988.349 kb on - strandat 988.391 kb on - strandat 988.448 kb on - strandat 988.451 kb on + strandat 988.468 kb on - strandat 988.468 kb on - strandat 988.529 kb on + strandat 988.530 kb on - strandat 988.532 kb on + strandat 988.564 kb on - strandat 988.615 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.627 kb on + strandat 988.629 kb on + strandat 988.629 kb on + strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.656 kb on + strandat 988.657 kb on - strandat 988.663 kb on - strandat 988.672 kb on - strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.681 kb on + strandat 988.681 kb on + strandat 988.682 kb on - strandat 988.683 kb on + strandat 988.683 kb on + strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.686 kb on + strandat 988.687 kb on - strandat 988.693 kb on + strandat 988.706 kb on + strandat 988.707 kb on - strandat 988.707 kb on - strandat 988.711 kb on - strandat 988.842 kb on + strand, within CA264_04280at 989.090 kb on - strandat 989.110 kb on + strandat 989.152 kb on + strandat 989.161 kb on - strandat 989.172 kb on + strandat 989.172 kb on + strandat 989.182 kb on - strandat 989.191 kb on + strandat 989.191 kb on + strandat 989.191 kb on + strandat 989.192 kb on - strandat 989.211 kb on + strandat 989.212 kb on - strandat 989.213 kb on + strandat 989.213 kb on + strandat 989.213 kb on + strandat 989.217 kb on + strandat 989.227 kb on + strand, within CA264_04285at 989.336 kb on - strand, within CA264_04285at 989.371 kb on - strand, within CA264_04285at 989.388 kb on + strand, within CA264_04285at 989.447 kb on + strandat 989.447 kb on + strandat 989.479 kb on + strandat 989.493 kb on + strandat 989.495 kb on + strandat 989.612 kb on + strandat 989.612 kb on + strandat 989.612 kb on + strandat 989.612 kb on + strandat 989.654 kb on + strandat 989.707 kb on - strandat 989.707 kb on - strandat 989.707 kb on - strandat 989.809 kb on - strand, within CA264_04290at 989.821 kb on - strand, within CA264_04290at 989.835 kb on + strand, within CA264_04290at 989.886 kb on + strand, within CA264_04290at 989.886 kb on + strand, within CA264_04290at 990.127 kb on - strand, within CA264_04290at 990.283 kb on + strand, within CA264_04290at 990.308 kb on + strand, within CA264_04290at 990.309 kb on - strand, within CA264_04290at 990.320 kb on + strand, within CA264_04290at 990.329 kb on + strand, within CA264_04290at 990.330 kb on - strand, within CA264_04290at 990.405 kb on - strand, within CA264_04290at 990.439 kb on + strand, within CA264_04290at 990.439 kb on + strand, within CA264_04290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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988,210 + +0.7
988,250 + -0.2
988,307 + -0.4
988,342 + -1.2
988,343 - -0.4
988,343 - +0.4
988,344 + +0.3
988,345 - +0.2
988,348 + +0.4
988,348 + -0.1
988,349 - -1.0
988,391 - -0.4
988,448 - -0.5
988,451 + -0.4
988,468 - -0.7
988,468 - -0.4
988,529 + -0.6
988,530 - -0.2
988,532 + +0.2
988,564 - +0.9
988,615 + -1.0
988,620 + +0.7
988,620 + -1.6
988,620 + -1.0
988,627 + -2.0
988,629 + -1.3
988,629 + -0.8
988,630 - -0.1
988,630 - -0.9
988,630 - +0.1
988,630 - +0.4
988,656 + -0.8
988,657 - -1.9
988,663 - -0.1
988,672 - -0.2
988,674 + +0.5
988,674 + +1.2
988,674 + -0.6
988,674 + -1.7
988,681 + -0.1
988,681 + -0.7
988,682 - -0.5
988,683 + -0.7
988,683 + -0.4
988,684 - -1.6
988,684 - -0.5
988,684 - +0.4
988,686 + +2.0
988,687 - +0.3
988,693 + +0.1
988,706 + +0.0
988,707 - -0.2
988,707 - -2.8
988,711 - -0.7
988,842 + CA264_04280 0.33 -0.3
989,090 - +0.4
989,110 + +2.8
989,152 + +0.2
989,161 - -0.6
989,172 + -0.2
989,172 + -0.4
989,182 - -0.2
989,191 + -0.9
989,191 + +0.2
989,191 + -1.0
989,192 - -1.6
989,211 + -0.4
989,212 - -1.2
989,213 + +0.0
989,213 + +1.2
989,213 + +0.5
989,217 + +1.9
989,227 + CA264_04285 0.14 -1.1
989,336 - CA264_04285 0.55 +0.1
989,371 - CA264_04285 0.69 -0.0
989,388 + CA264_04285 0.75 -1.1
989,447 + -0.3
989,447 + -1.2
989,479 + -0.6
989,493 + -0.5
989,495 + +0.5
989,612 + -0.8
989,612 + +0.0
989,612 + -1.2
989,612 + +3.2
989,654 + +0.5
989,707 - +0.1
989,707 - +0.0
989,707 - -0.6
989,809 - CA264_04290 0.14 -1.1
989,821 - CA264_04290 0.15 +0.9
989,835 + CA264_04290 0.16 -0.3
989,886 + CA264_04290 0.21 -1.2
989,886 + CA264_04290 0.21 +0.3
990,127 - CA264_04290 0.43 -0.8
990,283 + CA264_04290 0.58 -0.8
990,308 + CA264_04290 0.60 -0.9
990,309 - CA264_04290 0.60 +1.2
990,320 + CA264_04290 0.61 -0.4
990,329 + CA264_04290 0.62 +1.4
990,330 - CA264_04290 0.62 -0.5
990,405 - CA264_04290 0.69 +0.7
990,439 + CA264_04290 0.72 +0.7
990,439 + CA264_04290 0.72 -1.4

Or see this region's nucleotide sequence