Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04185

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04180 and CA264_04185 are separated by 331 nucleotidesCA264_04185 and CA264_04190 are separated by 405 nucleotides CA264_04180: CA264_04180 - hypothetical protein, at 964,253 to 965,755 _04180 CA264_04185: CA264_04185 - phosphatidylethanolamine-binding protein, at 966,087 to 966,533 _04185 CA264_04190: CA264_04190 - peptidase M16, at 966,939 to 968,345 _04190 Position (kb) 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 965.183 kb on - strand, within CA264_04180at 965.202 kb on - strand, within CA264_04180at 965.202 kb on - strand, within CA264_04180at 965.236 kb on - strand, within CA264_04180at 965.236 kb on - strand, within CA264_04180at 965.379 kb on + strand, within CA264_04180at 965.380 kb on - strand, within CA264_04180at 965.401 kb on + strand, within CA264_04180at 965.424 kb on - strand, within CA264_04180at 965.424 kb on - strand, within CA264_04180at 965.424 kb on - strand, within CA264_04180at 965.434 kb on + strand, within CA264_04180at 965.435 kb on - strand, within CA264_04180at 965.487 kb on + strand, within CA264_04180at 965.488 kb on - strand, within CA264_04180at 965.552 kb on - strand, within CA264_04180at 965.599 kb on - strand, within CA264_04180at 965.630 kb on + strandat 965.755 kb on + strandat 965.756 kb on - strandat 965.768 kb on - strandat 965.768 kb on - strandat 965.905 kb on - strandat 965.917 kb on + strandat 965.917 kb on + strandat 965.946 kb on + strandat 965.946 kb on + strandat 965.965 kb on - strandat 965.965 kb on - strandat 965.968 kb on + strandat 966.050 kb on - strandat 966.050 kb on - strandat 966.060 kb on + strandat 966.061 kb on - strandat 966.140 kb on + strand, within CA264_04185at 966.141 kb on - strand, within CA264_04185at 966.202 kb on + strand, within CA264_04185at 966.203 kb on - strand, within CA264_04185at 966.203 kb on - strand, within CA264_04185at 966.217 kb on + strand, within CA264_04185at 966.233 kb on + strand, within CA264_04185at 966.362 kb on + strand, within CA264_04185at 966.363 kb on - strand, within CA264_04185at 966.536 kb on - strandat 966.550 kb on + strandat 966.613 kb on + strandat 966.613 kb on + strandat 966.614 kb on - strandat 966.615 kb on + strandat 966.615 kb on + strandat 966.615 kb on + strandat 966.616 kb on - strandat 966.617 kb on + strandat 966.618 kb on - strandat 966.618 kb on - strandat 966.625 kb on + strandat 966.625 kb on + strandat 966.626 kb on - strandat 966.638 kb on - strandat 966.638 kb on - strandat 966.661 kb on - strandat 966.743 kb on - strandat 966.743 kb on - strandat 966.750 kb on - strandat 966.813 kb on + strandat 966.813 kb on + strandat 966.813 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.986 kb on + strandat 967.059 kb on + strandat 967.074 kb on - strandat 967.077 kb on + strandat 967.259 kb on + strand, within CA264_04190at 967.260 kb on - strand, within CA264_04190at 967.260 kb on - strand, within CA264_04190at 967.289 kb on - strand, within CA264_04190at 967.291 kb on + strand, within CA264_04190at 967.292 kb on - strand, within CA264_04190at 967.323 kb on + strand, within CA264_04190at 967.324 kb on - strand, within CA264_04190at 967.324 kb on - strand, within CA264_04190at 967.336 kb on + strand, within CA264_04190at 967.436 kb on + strand, within CA264_04190at 967.448 kb on - strand, within CA264_04190at 967.474 kb on - strand, within CA264_04190at 967.506 kb on + strand, within CA264_04190at 967.515 kb on - strand, within CA264_04190at 967.525 kb on - strand, within CA264_04190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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965,183 - CA264_04180 0.62 +0.2
965,202 - CA264_04180 0.63 +0.9
965,202 - CA264_04180 0.63 +0.5
965,236 - CA264_04180 0.65 +0.4
965,236 - CA264_04180 0.65 -0.0
965,379 + CA264_04180 0.75 -0.5
965,380 - CA264_04180 0.75 -0.6
965,401 + CA264_04180 0.76 -1.9
965,424 - CA264_04180 0.78 -1.6
965,424 - CA264_04180 0.78 -0.6
965,424 - CA264_04180 0.78 -0.1
965,434 + CA264_04180 0.79 -1.0
965,435 - CA264_04180 0.79 +0.4
965,487 + CA264_04180 0.82 -0.9
965,488 - CA264_04180 0.82 -1.5
965,552 - CA264_04180 0.86 +0.2
965,599 - CA264_04180 0.90 -0.4
965,630 + -0.1
965,755 + -0.2
965,756 - -0.7
965,768 - +0.6
965,768 - +0.6
965,905 - +0.8
965,917 + +1.5
965,917 + -0.4
965,946 + -0.0
965,946 + -0.3
965,965 - +1.4
965,965 - -0.4
965,968 + -0.6
966,050 - -1.2
966,050 - -0.2
966,060 + +0.3
966,061 - -0.5
966,140 + CA264_04185 0.12 +0.3
966,141 - CA264_04185 0.12 +1.0
966,202 + CA264_04185 0.26 -0.5
966,203 - CA264_04185 0.26 +2.2
966,203 - CA264_04185 0.26 -0.3
966,217 + CA264_04185 0.29 +0.5
966,233 + CA264_04185 0.33 -0.6
966,362 + CA264_04185 0.62 -0.5
966,363 - CA264_04185 0.62 +0.7
966,536 - -1.2
966,550 + -0.9
966,613 + -0.1
966,613 + -0.5
966,614 - +1.0
966,615 + -0.5
966,615 + +0.1
966,615 + -1.0
966,616 - -0.4
966,617 + +0.5
966,618 - -2.9
966,618 - +0.9
966,625 + -0.2
966,625 + -1.0
966,626 - -0.7
966,638 - -0.2
966,638 - +0.3
966,661 - -1.0
966,743 - +0.9
966,743 - +0.1
966,750 - -1.3
966,813 + -1.1
966,813 + -0.4
966,813 + -1.1
966,815 + -0.7
966,815 + +0.1
966,815 + -1.9
966,815 + -0.8
966,986 + -0.2
967,059 + -0.7
967,074 - -0.4
967,077 + +1.6
967,259 + CA264_04190 0.23 -1.4
967,260 - CA264_04190 0.23 -0.6
967,260 - CA264_04190 0.23 -0.5
967,289 - CA264_04190 0.25 -2.3
967,291 + CA264_04190 0.25 -0.9
967,292 - CA264_04190 0.25 -0.3
967,323 + CA264_04190 0.27 -1.1
967,324 - CA264_04190 0.27 -0.7
967,324 - CA264_04190 0.27 +1.5
967,336 + CA264_04190 0.28 +0.9
967,436 + CA264_04190 0.35 -0.2
967,448 - CA264_04190 0.36 -0.4
967,474 - CA264_04190 0.38 -1.7
967,506 + CA264_04190 0.40 +1.5
967,515 - CA264_04190 0.41 -0.1
967,525 - CA264_04190 0.42 +1.1

Or see this region's nucleotide sequence