Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03725

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03720 and CA264_03725 are separated by 141 nucleotidesCA264_03725 and CA264_03730 are separated by 35 nucleotides CA264_03720: CA264_03720 - ABC transporter, at 871,451 to 872,368 _03720 CA264_03725: CA264_03725 - urea carboxylase-associated protein, at 872,510 to 873,103 _03725 CA264_03730: CA264_03730 - hypothetical protein, at 873,139 to 873,858 _03730 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2at 871.514 kb on + strandat 871.663 kb on - strand, within CA264_03720at 871.672 kb on + strand, within CA264_03720at 871.697 kb on + strand, within CA264_03720at 871.703 kb on - strand, within CA264_03720at 871.798 kb on - strand, within CA264_03720at 871.798 kb on - strand, within CA264_03720at 871.810 kb on + strand, within CA264_03720at 871.817 kb on + strand, within CA264_03720at 871.874 kb on - strand, within CA264_03720at 871.874 kb on - strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.879 kb on - strand, within CA264_03720at 871.879 kb on - strand, within CA264_03720at 871.911 kb on - strand, within CA264_03720at 871.968 kb on - strand, within CA264_03720at 872.031 kb on - strand, within CA264_03720at 872.040 kb on + strand, within CA264_03720at 872.040 kb on + strand, within CA264_03720at 872.175 kb on + strand, within CA264_03720at 872.176 kb on - strand, within CA264_03720at 872.217 kb on + strand, within CA264_03720at 872.217 kb on + strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720at 872.315 kb on + strandat 872.333 kb on + strandat 872.333 kb on + strandat 872.334 kb on - strandat 872.334 kb on - strandat 872.342 kb on + strandat 872.480 kb on - strandat 872.552 kb on - strandat 872.552 kb on - strandat 872.602 kb on + strand, within CA264_03725at 872.602 kb on + strand, within CA264_03725at 872.603 kb on - strand, within CA264_03725at 872.603 kb on - strand, within CA264_03725at 872.631 kb on + strand, within CA264_03725at 872.632 kb on - strand, within CA264_03725at 872.632 kb on - strand, within CA264_03725at 872.632 kb on - strand, within CA264_03725at 872.760 kb on + strand, within CA264_03725at 872.761 kb on - strand, within CA264_03725at 872.802 kb on + strand, within CA264_03725at 872.802 kb on + strand, within CA264_03725at 872.803 kb on - strand, within CA264_03725at 872.873 kb on + strand, within CA264_03725at 872.873 kb on + strand, within CA264_03725at 872.873 kb on + strand, within CA264_03725at 872.923 kb on + strand, within CA264_03725at 873.011 kb on + strand, within CA264_03725at 873.060 kb on - strandat 873.060 kb on - strandat 873.064 kb on + strandat 873.065 kb on - strandat 873.129 kb on - strandat 873.244 kb on + strand, within CA264_03730at 873.244 kb on + strand, within CA264_03730at 873.245 kb on - strand, within CA264_03730at 873.245 kb on - strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.247 kb on - strand, within CA264_03730at 873.257 kb on + strand, within CA264_03730at 873.263 kb on - strand, within CA264_03730at 873.299 kb on + strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.438 kb on + strand, within CA264_03730at 873.439 kb on - strand, within CA264_03730at 873.517 kb on + strand, within CA264_03730at 873.517 kb on + strand, within CA264_03730at 873.518 kb on - strand, within CA264_03730at 873.596 kb on + strand, within CA264_03730at 873.596 kb on + strand, within CA264_03730at 873.597 kb on - strand, within CA264_03730at 873.597 kb on - strand, within CA264_03730at 873.625 kb on + strand, within CA264_03730at 873.629 kb on + strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.783 kb on + strand, within CA264_03730at 873.783 kb on + strand, within CA264_03730at 873.834 kb on - strandat 873.858 kb on + strandat 873.859 kb on - strandat 873.859 kb on - strandat 873.909 kb on - strandat 873.945 kb on + strandat 873.963 kb on - strandat 873.963 kb on - strandat 873.985 kb on + strandat 873.995 kb on - strandat 874.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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871,514 + -1.1
871,663 - CA264_03720 0.23 -1.1
871,672 + CA264_03720 0.24 -0.8
871,697 + CA264_03720 0.27 -2.0
871,703 - CA264_03720 0.27 -0.9
871,798 - CA264_03720 0.38 +0.2
871,798 - CA264_03720 0.38 +0.3
871,810 + CA264_03720 0.39 -0.5
871,817 + CA264_03720 0.40 -0.4
871,874 - CA264_03720 0.46 -0.3
871,874 - CA264_03720 0.46 -0.8
871,878 + CA264_03720 0.47 -1.0
871,878 + CA264_03720 0.47 +0.4
871,878 + CA264_03720 0.47 -0.4
871,879 - CA264_03720 0.47 -0.6
871,879 - CA264_03720 0.47 -0.7
871,911 - CA264_03720 0.50 +1.4
871,968 - CA264_03720 0.56 -1.0
872,031 - CA264_03720 0.63 +0.3
872,040 + CA264_03720 0.64 -0.3
872,040 + CA264_03720 0.64 -0.9
872,175 + CA264_03720 0.79 -0.2
872,176 - CA264_03720 0.79 -0.3
872,217 + CA264_03720 0.83 -0.1
872,217 + CA264_03720 0.83 +0.4
872,218 - CA264_03720 0.84 -1.2
872,218 - CA264_03720 0.84 -0.5
872,218 - CA264_03720 0.84 -0.0
872,315 + -0.4
872,333 + -2.7
872,333 + -0.9
872,334 - -2.4
872,334 - -1.6
872,342 + -0.0
872,480 - -0.4
872,552 - -0.6
872,552 - +0.1
872,602 + CA264_03725 0.15 -1.0
872,602 + CA264_03725 0.15 -1.7
872,603 - CA264_03725 0.16 -2.1
872,603 - CA264_03725 0.16 -1.0
872,631 + CA264_03725 0.20 -1.2
872,632 - CA264_03725 0.21 -0.3
872,632 - CA264_03725 0.21 -1.3
872,632 - CA264_03725 0.21 -0.8
872,760 + CA264_03725 0.42 -2.4
872,761 - CA264_03725 0.42 +0.0
872,802 + CA264_03725 0.49 -1.2
872,802 + CA264_03725 0.49 -0.9
872,803 - CA264_03725 0.49 -1.3
872,873 + CA264_03725 0.61 -0.6
872,873 + CA264_03725 0.61 -0.3
872,873 + CA264_03725 0.61 -0.6
872,923 + CA264_03725 0.70 -0.3
873,011 + CA264_03725 0.84 -0.8
873,060 - +0.1
873,060 - -0.4
873,064 + +1.7
873,065 - +1.7
873,129 - +0.1
873,244 + CA264_03730 0.15 +0.4
873,244 + CA264_03730 0.15 +0.4
873,245 - CA264_03730 0.15 -0.8
873,245 - CA264_03730 0.15 +0.3
873,246 + CA264_03730 0.15 -1.0
873,246 + CA264_03730 0.15 -0.2
873,246 + CA264_03730 0.15 +0.2
873,246 + CA264_03730 0.15 -0.6
873,246 + CA264_03730 0.15 -0.1
873,247 - CA264_03730 0.15 -0.8
873,257 + CA264_03730 0.16 -0.3
873,263 - CA264_03730 0.17 -0.9
873,299 + CA264_03730 0.22 -0.1
873,429 - CA264_03730 0.40 -1.8
873,429 - CA264_03730 0.40 +0.3
873,429 - CA264_03730 0.40 +0.7
873,438 + CA264_03730 0.42 +0.3
873,439 - CA264_03730 0.42 +0.5
873,517 + CA264_03730 0.53 -0.7
873,517 + CA264_03730 0.53 +0.6
873,518 - CA264_03730 0.53 +1.9
873,596 + CA264_03730 0.63 +1.7
873,596 + CA264_03730 0.63 +0.2
873,597 - CA264_03730 0.64 +1.3
873,597 - CA264_03730 0.64 -0.2
873,625 + CA264_03730 0.68 +0.5
873,629 + CA264_03730 0.68 +0.0
873,630 - CA264_03730 0.68 +0.6
873,630 - CA264_03730 0.68 -0.4
873,630 - CA264_03730 0.68 -0.0
873,630 - CA264_03730 0.68 -0.3
873,783 + CA264_03730 0.89 +1.3
873,783 + CA264_03730 0.89 -0.8
873,834 - -0.7
873,858 + +0.3
873,859 - -0.6
873,859 - +0.1
873,909 - -1.2
873,945 + -0.8
873,963 - -0.3
873,963 - +0.4
873,985 + -0.9
873,995 - +1.5
874,059 - -0.1

Or see this region's nucleotide sequence