Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03655 and CA264_03660 are separated by 97 nucleotides CA264_03660 and CA264_03665 are separated by 492 nucleotides
CA264_03655: CA264_03655 - multidrug efflux RND transporter permease subunit, at 852,144 to 855,338
_03655
CA264_03660: CA264_03660 - hypothetical protein, at 855,436 to 855,912
_03660
CA264_03665: CA264_03665 - FUSC family protein, at 856,405 to 857,457
_03665
Position (kb) 855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.461 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.634 kb on - strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.650 kb on - strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.793 kb on - strand, within CA264_03655 at 854.794 kb on + strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.823 kb on + strand, within CA264_03655 at 854.824 kb on - strand, within CA264_03655 at 854.905 kb on + strand, within CA264_03655 at 854.906 kb on - strand, within CA264_03655 at 854.909 kb on + strand, within CA264_03655 at 854.942 kb on + strand, within CA264_03655 at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.098 kb on - strand at 855.169 kb on + strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.225 kb on + strand at 855.226 kb on - strand at 855.226 kb on - strand at 855.324 kb on + strand at 855.325 kb on - strand at 855.337 kb on - strand at 855.341 kb on - strand at 855.341 kb on - strand at 855.427 kb on + strand at 855.504 kb on + strand, within CA264_03660 at 855.743 kb on - strand, within CA264_03660 at 855.824 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.869 kb on + strand at 855.870 kb on - strand at 855.917 kb on + strand at 855.918 kb on - strand at 855.953 kb on + strand at 855.954 kb on - strand at 855.958 kb on + strand at 855.978 kb on - strand at 855.982 kb on + strand at 855.996 kb on + strand at 856.190 kb on + strand at 856.192 kb on + strand at 856.196 kb on + strand at 856.196 kb on + strand at 856.197 kb on - strand at 856.225 kb on - strand at 856.309 kb on - strand at 856.311 kb on + strand at 856.330 kb on - strand at 856.411 kb on - strand at 856.428 kb on - strand at 856.477 kb on - strand at 856.501 kb on + strand at 856.561 kb on + strand, within CA264_03665 at 856.561 kb on + strand, within CA264_03665 at 856.562 kb on - strand, within CA264_03665 at 856.562 kb on - strand, within CA264_03665 at 856.562 kb on - strand, within CA264_03665 at 856.599 kb on - strand, within CA264_03665 at 856.599 kb on - strand, within CA264_03665 at 856.599 kb on - strand, within CA264_03665 at 856.693 kb on + strand, within CA264_03665 at 856.720 kb on + strand, within CA264_03665 at 856.721 kb on - strand, within CA264_03665 at 856.721 kb on - strand, within CA264_03665 at 856.723 kb on + strand, within CA264_03665 at 856.724 kb on - strand, within CA264_03665 at 856.729 kb on - strand, within CA264_03665 at 856.729 kb on - strand, within CA264_03665 at 856.869 kb on + strand, within CA264_03665 at 856.873 kb on + strand, within CA264_03665 at 856.873 kb on + strand, within CA264_03665 at 856.873 kb on + strand, within CA264_03665 at 856.874 kb on - strand, within CA264_03665 at 856.874 kb on - strand, within CA264_03665
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 854,461 + CA264_03655 0.73 -2.1 854,474 + CA264_03655 0.73 -2.1 854,474 + CA264_03655 0.73 -0.7 854,475 - CA264_03655 0.73 -2.9 854,475 - CA264_03655 0.73 -1.4 854,481 + CA264_03655 0.73 -1.5 854,481 + CA264_03655 0.73 -1.2 854,512 - CA264_03655 0.74 +0.2 854,512 - CA264_03655 0.74 -0.3 854,514 + CA264_03655 0.74 -0.6 854,514 + CA264_03655 0.74 +0.5 854,514 + CA264_03655 0.74 -1.7 854,514 + CA264_03655 0.74 -2.2 854,515 - CA264_03655 0.74 -0.0 854,515 - CA264_03655 0.74 -0.8 854,634 - CA264_03655 0.78 -1.6 854,649 + CA264_03655 0.78 +0.1 854,649 + CA264_03655 0.78 +0.3 854,650 - CA264_03655 0.78 -0.5 854,698 + CA264_03655 0.80 -1.6 854,698 + CA264_03655 0.80 -1.4 854,793 - CA264_03655 0.83 +0.3 854,794 + CA264_03655 0.83 -3.4 854,795 - CA264_03655 0.83 -1.6 854,795 - CA264_03655 0.83 -0.6 854,795 - CA264_03655 0.83 -2.0 854,800 + CA264_03655 0.83 -0.2 854,800 + CA264_03655 0.83 -2.1 854,800 + CA264_03655 0.83 +0.5 854,801 - CA264_03655 0.83 -0.6 854,801 - CA264_03655 0.83 -2.2 854,801 - CA264_03655 0.83 -1.1 854,801 - CA264_03655 0.83 -1.4 854,823 + CA264_03655 0.84 -1.2 854,824 - CA264_03655 0.84 +1.9 854,905 + CA264_03655 0.86 -0.8 854,906 - CA264_03655 0.86 -1.6 854,909 + CA264_03655 0.87 +0.3 854,942 + CA264_03655 0.88 +0.3 855,097 + -1.6 855,097 + -1.8 855,097 + +0.5 855,097 + -1.3 855,097 + -1.1 855,097 + -1.0 855,098 - +0.0 855,169 + -1.7 855,170 - -1.4 855,170 - +0.0 855,225 + -0.5 855,226 - -1.0 855,226 - -1.7 855,324 + +0.3 855,325 - -0.6 855,337 - -2.1 855,341 - -1.5 855,341 - -0.1 855,427 + +0.4 855,504 + CA264_03660 0.14 -1.3 855,743 - CA264_03660 0.64 +0.1 855,824 - CA264_03660 0.81 -1.4 855,863 - CA264_03660 0.90 -0.7 855,863 - CA264_03660 0.90 +0.8 855,869 + -0.4 855,870 - -0.8 855,917 + -0.9 855,918 - -0.3 855,953 + +1.5 855,954 - -0.4 855,958 + -0.9 855,978 - -1.2 855,982 + +0.6 855,996 + +1.9 856,190 + +0.5 856,192 + -0.1 856,196 + -0.2 856,196 + -0.5 856,197 - +0.5 856,225 - +0.5 856,309 - +0.3 856,311 + +1.7 856,330 - -1.0 856,411 - +0.0 856,428 - -2.3 856,477 - -0.7 856,501 + +1.1 856,561 + CA264_03665 0.15 -1.3 856,561 + CA264_03665 0.15 -0.7 856,562 - CA264_03665 0.15 -0.8 856,562 - CA264_03665 0.15 +0.1 856,562 - CA264_03665 0.15 -1.9 856,599 - CA264_03665 0.18 +2.5 856,599 - CA264_03665 0.18 -0.2 856,599 - CA264_03665 0.18 -3.0 856,693 + CA264_03665 0.27 -1.5 856,720 + CA264_03665 0.30 +0.7 856,721 - CA264_03665 0.30 -0.4 856,721 - CA264_03665 0.30 -0.1 856,723 + CA264_03665 0.30 +1.2 856,724 - CA264_03665 0.30 -0.4 856,729 - CA264_03665 0.31 -1.7 856,729 - CA264_03665 0.31 -1.3 856,869 + CA264_03665 0.44 -1.2 856,873 + CA264_03665 0.44 -0.6 856,873 + CA264_03665 0.44 +0.5 856,873 + CA264_03665 0.44 -0.1 856,874 - CA264_03665 0.45 -0.3 856,874 - CA264_03665 0.45 -0.7
Or see this region's nucleotide sequence