Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03515

Experiment: m.b. Lomefloxacin 0.004 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03510 and CA264_03515 are separated by 265 nucleotidesCA264_03515 and CA264_03520 are separated by 153 nucleotides CA264_03510: CA264_03510 - hypothetical protein, at 818,304 to 818,891 _03510 CA264_03515: CA264_03515 - hypothetical protein, at 819,157 to 819,561 _03515 CA264_03520: CA264_03520 - hypothetical protein, at 819,715 to 820,194 _03520 Position (kb) 819 820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 818.168 kb on - strandat 818.222 kb on + strandat 818.237 kb on - strandat 818.266 kb on + strandat 818.266 kb on + strandat 818.267 kb on - strandat 818.267 kb on - strandat 818.303 kb on + strandat 818.304 kb on - strandat 818.304 kb on - strandat 818.355 kb on + strandat 818.394 kb on + strand, within CA264_03510at 818.394 kb on + strand, within CA264_03510at 818.395 kb on - strand, within CA264_03510at 818.436 kb on + strand, within CA264_03510at 818.484 kb on + strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.511 kb on + strand, within CA264_03510at 818.512 kb on - strand, within CA264_03510at 818.542 kb on - strand, within CA264_03510at 818.595 kb on + strand, within CA264_03510at 818.596 kb on - strand, within CA264_03510at 818.631 kb on + strand, within CA264_03510at 818.632 kb on - strand, within CA264_03510at 818.651 kb on + strand, within CA264_03510at 818.692 kb on - strand, within CA264_03510at 818.782 kb on - strand, within CA264_03510at 818.887 kb on - strandat 818.887 kb on - strandat 818.887 kb on - strandat 818.902 kb on + strandat 819.047 kb on + strandat 819.141 kb on + strandat 819.153 kb on + strandat 819.153 kb on + strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.158 kb on + strandat 819.161 kb on + strandat 819.161 kb on + strandat 819.162 kb on - strandat 819.277 kb on - strand, within CA264_03515at 819.316 kb on + strand, within CA264_03515at 819.316 kb on + strand, within CA264_03515at 819.317 kb on - strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.327 kb on - strand, within CA264_03515at 819.338 kb on + strand, within CA264_03515at 819.398 kb on + strand, within CA264_03515at 819.487 kb on - strand, within CA264_03515at 819.529 kb on + strandat 819.550 kb on + strandat 819.565 kb on + strandat 819.573 kb on + strandat 819.573 kb on + strandat 819.575 kb on + strandat 819.576 kb on - strandat 819.584 kb on + strandat 819.584 kb on + strandat 819.584 kb on + strandat 819.585 kb on - strandat 819.585 kb on - strandat 819.618 kb on - strandat 819.697 kb on + strandat 819.697 kb on + strandat 819.697 kb on + strandat 819.698 kb on - strandat 819.698 kb on - strandat 819.742 kb on - strandat 819.743 kb on + strandat 819.743 kb on + strandat 819.744 kb on - strandat 819.751 kb on + strandat 819.857 kb on + strand, within CA264_03520at 819.858 kb on - strand, within CA264_03520at 819.890 kb on - strand, within CA264_03520at 819.922 kb on - strand, within CA264_03520at 819.923 kb on + strand, within CA264_03520at 819.924 kb on - strand, within CA264_03520at 819.924 kb on - strand, within CA264_03520at 819.924 kb on - strand, within CA264_03520at 819.924 kb on - strand, within CA264_03520at 819.931 kb on + strand, within CA264_03520at 819.931 kb on + strand, within CA264_03520at 819.931 kb on + strand, within CA264_03520at 819.932 kb on - strand, within CA264_03520at 819.932 kb on - strand, within CA264_03520at 819.992 kb on + strand, within CA264_03520at 820.006 kb on + strand, within CA264_03520at 820.020 kb on - strand, within CA264_03520at 820.046 kb on + strand, within CA264_03520at 820.046 kb on + strand, within CA264_03520at 820.197 kb on - strandat 820.209 kb on - strandat 820.225 kb on + strandat 820.253 kb on - strandat 820.284 kb on - strandat 820.284 kb on - strandat 820.284 kb on - strandat 820.286 kb on + strandat 820.286 kb on + strandat 820.310 kb on - strandat 820.348 kb on - strandat 820.413 kb on - strandat 820.490 kb on - strandat 820.493 kb on - strandat 820.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
remove
818,168 - +0.0
818,222 + -1.4
818,237 - -2.0
818,266 + +1.6
818,266 + -0.0
818,267 - -0.5
818,267 - +0.4
818,303 + -0.1
818,304 - -2.0
818,304 - +0.1
818,355 + -0.8
818,394 + CA264_03510 0.15 -0.7
818,394 + CA264_03510 0.15 +1.5
818,395 - CA264_03510 0.15 -1.0
818,436 + CA264_03510 0.22 -1.1
818,484 + CA264_03510 0.31 -0.9
818,485 - CA264_03510 0.31 -2.1
818,485 - CA264_03510 0.31 -0.8
818,511 + CA264_03510 0.35 -0.8
818,512 - CA264_03510 0.35 -0.5
818,542 - CA264_03510 0.40 +0.9
818,595 + CA264_03510 0.49 -0.3
818,596 - CA264_03510 0.50 +0.2
818,631 + CA264_03510 0.56 -1.8
818,632 - CA264_03510 0.56 +1.0
818,651 + CA264_03510 0.59 +0.5
818,692 - CA264_03510 0.66 -0.9
818,782 - CA264_03510 0.81 -0.4
818,887 - -0.8
818,887 - -0.0
818,887 - +1.2
818,902 + -3.2
819,047 + +1.5
819,141 + -1.2
819,153 + +1.4
819,153 + -0.8
819,154 - +0.7
819,154 - +0.3
819,154 - +0.2
819,154 - -0.6
819,154 - +0.3
819,154 - +1.0
819,154 - +0.2
819,158 + -1.6
819,161 + -1.5
819,161 + +0.1
819,162 - -0.6
819,277 - CA264_03515 0.30 -1.4
819,316 + CA264_03515 0.39 -0.4
819,316 + CA264_03515 0.39 -2.1
819,317 - CA264_03515 0.40 +0.8
819,326 + CA264_03515 0.42 -1.7
819,326 + CA264_03515 0.42 -1.1
819,326 + CA264_03515 0.42 -0.8
819,327 - CA264_03515 0.42 +0.1
819,338 + CA264_03515 0.45 +0.3
819,398 + CA264_03515 0.60 +0.4
819,487 - CA264_03515 0.81 -0.7
819,529 + -0.7
819,550 + -2.6
819,565 + -0.5
819,573 + +0.4
819,573 + -0.6
819,575 + -0.8
819,576 - -1.6
819,584 + +2.1
819,584 + -1.1
819,584 + -0.4
819,585 - +0.4
819,585 - +0.5
819,618 - -1.4
819,697 + -1.6
819,697 + -0.3
819,697 + +0.9
819,698 - -0.2
819,698 - -0.9
819,742 - +0.3
819,743 + -0.2
819,743 + -1.7
819,744 - +0.9
819,751 + +0.2
819,857 + CA264_03520 0.30 -0.3
819,858 - CA264_03520 0.30 -0.3
819,890 - CA264_03520 0.36 -0.8
819,922 - CA264_03520 0.43 +0.1
819,923 + CA264_03520 0.43 +0.7
819,924 - CA264_03520 0.44 +1.6
819,924 - CA264_03520 0.44 -1.6
819,924 - CA264_03520 0.44 +0.2
819,924 - CA264_03520 0.44 -1.0
819,931 + CA264_03520 0.45 -1.8
819,931 + CA264_03520 0.45 -0.6
819,931 + CA264_03520 0.45 -0.5
819,932 - CA264_03520 0.45 -0.0
819,932 - CA264_03520 0.45 -1.1
819,992 + CA264_03520 0.58 -0.7
820,006 + CA264_03520 0.61 -1.0
820,020 - CA264_03520 0.64 -0.5
820,046 + CA264_03520 0.69 -0.1
820,046 + CA264_03520 0.69 -0.5
820,197 - -0.7
820,209 - -0.2
820,225 + -0.3
820,253 - -0.4
820,284 - -0.4
820,284 - -1.1
820,284 - -0.6
820,286 + -0.4
820,286 + +0.4
820,310 - -0.6
820,348 - -0.4
820,413 - -0.4
820,490 - -0.6
820,493 - +0.4
820,495 - -0.0

Or see this region's nucleotide sequence