Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03505

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03500 and CA264_03505 are separated by 345 nucleotidesCA264_03505 and CA264_03510 are separated by 244 nucleotides CA264_03500: CA264_03500 - excinuclease ABC subunit A, at 814,541 to 817,096 _03500 CA264_03505: CA264_03505 - hypothetical protein, at 817,442 to 818,059 _03505 CA264_03510: CA264_03510 - hypothetical protein, at 818,304 to 818,891 _03510 Position (kb) 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 816.685 kb on + strand, within CA264_03500at 816.724 kb on - strand, within CA264_03500at 816.724 kb on - strand, within CA264_03500at 816.840 kb on - strand, within CA264_03500at 817.080 kb on + strandat 817.081 kb on - strandat 817.104 kb on + strandat 817.273 kb on + strandat 817.391 kb on + strandat 817.391 kb on + strandat 817.391 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.494 kb on + strandat 817.495 kb on - strandat 817.551 kb on - strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.614 kb on + strand, within CA264_03505at 817.615 kb on - strand, within CA264_03505at 817.627 kb on + strand, within CA264_03505at 817.653 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.719 kb on - strand, within CA264_03505at 817.721 kb on - strand, within CA264_03505at 817.893 kb on - strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.934 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.977 kb on - strand, within CA264_03505at 818.041 kb on + strandat 818.042 kb on - strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.046 kb on - strandat 818.065 kb on - strandat 818.099 kb on + strandat 818.100 kb on - strandat 818.105 kb on + strandat 818.168 kb on - strandat 818.222 kb on + strandat 818.237 kb on - strandat 818.266 kb on + strandat 818.266 kb on + strandat 818.267 kb on - strandat 818.267 kb on - strandat 818.303 kb on + strandat 818.304 kb on - strandat 818.304 kb on - strandat 818.355 kb on + strandat 818.394 kb on + strand, within CA264_03510at 818.394 kb on + strand, within CA264_03510at 818.395 kb on - strand, within CA264_03510at 818.436 kb on + strand, within CA264_03510at 818.484 kb on + strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.511 kb on + strand, within CA264_03510at 818.512 kb on - strand, within CA264_03510at 818.542 kb on - strand, within CA264_03510at 818.595 kb on + strand, within CA264_03510at 818.596 kb on - strand, within CA264_03510at 818.631 kb on + strand, within CA264_03510at 818.632 kb on - strand, within CA264_03510at 818.651 kb on + strand, within CA264_03510at 818.692 kb on - strand, within CA264_03510at 818.782 kb on - strand, within CA264_03510at 818.887 kb on - strandat 818.887 kb on - strandat 818.887 kb on - strandat 818.902 kb on + strandat 819.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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816,685 + CA264_03500 0.84 -0.1
816,724 - CA264_03500 0.85 +0.9
816,724 - CA264_03500 0.85 -1.1
816,840 - CA264_03500 0.90 -0.3
817,080 + -1.4
817,081 - +0.6
817,104 + -0.9
817,273 + +0.4
817,391 + -1.0
817,391 + -0.9
817,391 + -0.6
817,413 + -1.9
817,413 + -0.4
817,413 + -0.4
817,494 + +1.5
817,495 - +0.3
817,551 - CA264_03505 0.18 +0.7
817,612 + CA264_03505 0.28 +0.0
817,612 + CA264_03505 0.28 +1.8
817,613 - CA264_03505 0.28 +0.1
817,613 - CA264_03505 0.28 -0.3
817,614 + CA264_03505 0.28 -1.4
817,615 - CA264_03505 0.28 -0.5
817,627 + CA264_03505 0.30 -0.9
817,653 - CA264_03505 0.34 -0.6
817,688 - CA264_03505 0.40 +0.3
817,688 - CA264_03505 0.40 -0.4
817,719 - CA264_03505 0.45 +1.0
817,721 - CA264_03505 0.45 -1.7
817,893 - CA264_03505 0.73 -1.3
817,928 + CA264_03505 0.79 +0.0
817,928 + CA264_03505 0.79 -0.3
817,934 + CA264_03505 0.80 +0.6
817,942 + CA264_03505 0.81 +1.0
817,942 + CA264_03505 0.81 -0.7
817,942 + CA264_03505 0.81 -0.5
817,943 - CA264_03505 0.81 -1.8
817,943 - CA264_03505 0.81 -0.1
817,943 - CA264_03505 0.81 -0.6
817,951 - CA264_03505 0.82 +0.3
817,951 - CA264_03505 0.82 -0.2
817,977 - CA264_03505 0.87 +0.0
818,041 + -0.5
818,042 - -1.4
818,045 + +0.4
818,045 + -1.1
818,045 + -0.1
818,046 - -1.2
818,065 - -0.6
818,099 + +0.2
818,100 - +1.0
818,105 + -0.1
818,168 - +0.0
818,222 + -1.4
818,237 - -2.0
818,266 + +1.6
818,266 + -0.0
818,267 - -0.5
818,267 - +0.4
818,303 + -0.1
818,304 - -2.0
818,304 - +0.1
818,355 + -0.8
818,394 + CA264_03510 0.15 -0.7
818,394 + CA264_03510 0.15 +1.5
818,395 - CA264_03510 0.15 -1.0
818,436 + CA264_03510 0.22 -1.1
818,484 + CA264_03510 0.31 -0.9
818,485 - CA264_03510 0.31 -2.1
818,485 - CA264_03510 0.31 -0.8
818,511 + CA264_03510 0.35 -0.8
818,512 - CA264_03510 0.35 -0.5
818,542 - CA264_03510 0.40 +0.9
818,595 + CA264_03510 0.49 -0.3
818,596 - CA264_03510 0.50 +0.2
818,631 + CA264_03510 0.56 -1.8
818,632 - CA264_03510 0.56 +1.0
818,651 + CA264_03510 0.59 +0.5
818,692 - CA264_03510 0.66 -0.9
818,782 - CA264_03510 0.81 -0.4
818,887 - -0.8
818,887 - -0.0
818,887 - +1.2
818,902 + -3.2
819,047 + +1.5

Or see this region's nucleotide sequence