Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03260

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03250 and CA264_03255 are separated by 161 nucleotidesCA264_03255 and CA264_03260 are separated by 192 nucleotidesCA264_03260 and CA264_03265 are separated by 29 nucleotides CA264_03250: CA264_03250 - metal transporter, at 765,131 to 766,405 _03250 CA264_03255: CA264_03255 - hypothetical protein, at 766,567 to 767,004 _03255 CA264_03260: CA264_03260 - MBL fold hydrolase, at 767,197 to 768,039 _03260 CA264_03265: CA264_03265 - N-acyl-D-amino acid deacylase, at 768,069 to 769,640 _03265 Position (kb) 767 768 769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 766.225 kb on + strand, within CA264_03250at 766.299 kb on - strandat 766.304 kb on - strandat 766.340 kb on + strandat 766.389 kb on - strandat 766.392 kb on - strandat 766.635 kb on - strand, within CA264_03255at 766.879 kb on - strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.920 kb on + strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.921 kb on - strand, within CA264_03255at 766.981 kb on + strandat 767.012 kb on - strandat 767.012 kb on - strandat 767.032 kb on + strandat 767.032 kb on + strandat 767.032 kb on + strandat 767.033 kb on - strandat 767.033 kb on - strandat 767.085 kb on - strandat 767.132 kb on + strandat 767.140 kb on + strandat 767.141 kb on - strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.167 kb on + strandat 767.206 kb on + strandat 767.207 kb on - strandat 767.221 kb on - strandat 767.232 kb on + strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.249 kb on - strandat 767.362 kb on - strand, within CA264_03260at 767.424 kb on - strand, within CA264_03260at 767.431 kb on + strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.436 kb on - strand, within CA264_03260at 767.592 kb on + strand, within CA264_03260at 767.623 kb on - strand, within CA264_03260at 767.729 kb on - strand, within CA264_03260at 767.729 kb on - strand, within CA264_03260at 767.731 kb on + strand, within CA264_03260at 767.732 kb on - strand, within CA264_03260at 767.803 kb on + strand, within CA264_03260at 767.803 kb on + strand, within CA264_03260at 767.804 kb on - strand, within CA264_03260at 767.804 kb on - strand, within CA264_03260at 767.856 kb on + strand, within CA264_03260at 767.857 kb on - strand, within CA264_03260at 767.857 kb on - strand, within CA264_03260at 767.991 kb on - strandat 768.026 kb on + strandat 768.026 kb on + strandat 768.026 kb on + strandat 768.027 kb on - strandat 768.033 kb on - strandat 768.038 kb on - strandat 768.038 kb on - strandat 768.051 kb on - strandat 768.199 kb on + strandat 768.231 kb on - strand, within CA264_03265at 768.267 kb on - strand, within CA264_03265at 768.269 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.361 kb on + strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.362 kb on - strand, within CA264_03265at 768.491 kb on - strand, within CA264_03265at 768.517 kb on - strand, within CA264_03265at 768.589 kb on + strand, within CA264_03265at 768.589 kb on + strand, within CA264_03265at 768.590 kb on - strand, within CA264_03265at 768.590 kb on - strand, within CA264_03265at 768.607 kb on - strand, within CA264_03265at 768.607 kb on - strand, within CA264_03265at 768.652 kb on + strand, within CA264_03265at 768.652 kb on + strand, within CA264_03265at 768.757 kb on + strand, within CA264_03265at 768.758 kb on - strand, within CA264_03265at 768.763 kb on + strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.764 kb on - strand, within CA264_03265at 768.767 kb on + strand, within CA264_03265at 768.767 kb on + strand, within CA264_03265at 768.768 kb on - strand, within CA264_03265at 768.873 kb on - strand, within CA264_03265at 768.873 kb on - strand, within CA264_03265at 768.912 kb on + strand, within CA264_03265at 768.913 kb on - strand, within CA264_03265at 768.925 kb on - strand, within CA264_03265at 768.925 kb on - strand, within CA264_03265at 768.928 kb on + strand, within CA264_03265at 768.929 kb on - strand, within CA264_03265at 768.982 kb on - strand, within CA264_03265at 768.984 kb on + strand, within CA264_03265at 768.985 kb on - strand, within CA264_03265at 769.003 kb on - strand, within CA264_03265at 769.022 kb on - strand, within CA264_03265at 769.025 kb on - strand, within CA264_03265at 769.036 kb on + strand, within CA264_03265at 769.037 kb on - strand, within CA264_03265at 769.037 kb on - strand, within CA264_03265

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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766,225 + CA264_03250 0.86 +0.1
766,299 - -0.4
766,304 - -0.9
766,340 + -0.1
766,389 - +0.4
766,392 - -0.2
766,635 - CA264_03255 0.16 -0.6
766,879 - CA264_03255 0.71 -0.4
766,920 + CA264_03255 0.81 +0.3
766,920 + CA264_03255 0.81 -0.6
766,920 + CA264_03255 0.81 -0.0
766,920 + CA264_03255 0.81 +0.6
766,921 - CA264_03255 0.81 -0.1
766,921 - CA264_03255 0.81 +0.6
766,921 - CA264_03255 0.81 -3.0
766,921 - CA264_03255 0.81 +0.5
766,981 + -1.1
767,012 - +1.7
767,012 - +0.5
767,032 + +1.8
767,032 + -0.3
767,032 + -0.7
767,033 - -0.8
767,033 - -0.2
767,085 - -0.2
767,132 + -0.8
767,140 + -0.8
767,141 - -1.0
767,167 + -0.4
767,167 + +1.7
767,167 + +1.3
767,206 + -0.8
767,207 - -0.4
767,221 - -2.2
767,232 + -0.9
767,249 - -0.1
767,249 - -1.3
767,249 - -1.4
767,362 - CA264_03260 0.20 -1.4
767,424 - CA264_03260 0.27 +0.1
767,431 + CA264_03260 0.28 -1.1
767,436 - CA264_03260 0.28 -0.8
767,436 - CA264_03260 0.28 -2.4
767,436 - CA264_03260 0.28 -1.0
767,592 + CA264_03260 0.47 -0.3
767,623 - CA264_03260 0.51 -0.5
767,729 - CA264_03260 0.63 -0.2
767,729 - CA264_03260 0.63 +1.5
767,731 + CA264_03260 0.63 +5.4
767,732 - CA264_03260 0.63 -2.0
767,803 + CA264_03260 0.72 -0.2
767,803 + CA264_03260 0.72 -0.7
767,804 - CA264_03260 0.72 +0.2
767,804 - CA264_03260 0.72 -0.4
767,856 + CA264_03260 0.78 +0.3
767,857 - CA264_03260 0.78 +0.5
767,857 - CA264_03260 0.78 -0.5
767,991 - +1.4
768,026 + -0.0
768,026 + -1.3
768,026 + +0.1
768,027 - -0.7
768,033 - +0.8
768,038 - -0.0
768,038 - -0.5
768,051 - -0.3
768,199 + +1.6
768,231 - CA264_03265 0.10 -0.6
768,267 - CA264_03265 0.13 -0.1
768,269 + CA264_03265 0.13 +0.1
768,361 + CA264_03265 0.19 -0.8
768,361 + CA264_03265 0.19 -0.6
768,361 + CA264_03265 0.19 -1.3
768,361 + CA264_03265 0.19 -0.9
768,362 - CA264_03265 0.19 -0.9
768,362 - CA264_03265 0.19 -2.6
768,362 - CA264_03265 0.19 -0.1
768,491 - CA264_03265 0.27 -0.4
768,517 - CA264_03265 0.28 -2.2
768,589 + CA264_03265 0.33 -1.3
768,589 + CA264_03265 0.33 -0.4
768,590 - CA264_03265 0.33 +0.1
768,590 - CA264_03265 0.33 +0.2
768,607 - CA264_03265 0.34 -1.1
768,607 - CA264_03265 0.34 +0.6
768,652 + CA264_03265 0.37 -0.7
768,652 + CA264_03265 0.37 +0.7
768,757 + CA264_03265 0.44 -0.9
768,758 - CA264_03265 0.44 -0.1
768,763 + CA264_03265 0.44 +0.2
768,764 - CA264_03265 0.44 +0.9
768,764 - CA264_03265 0.44 -1.2
768,764 - CA264_03265 0.44 -1.2
768,764 - CA264_03265 0.44 +1.0
768,767 + CA264_03265 0.44 -1.8
768,767 + CA264_03265 0.44 +1.0
768,768 - CA264_03265 0.44 -0.7
768,873 - CA264_03265 0.51 -1.1
768,873 - CA264_03265 0.51 +0.3
768,912 + CA264_03265 0.54 +0.1
768,913 - CA264_03265 0.54 +0.8
768,925 - CA264_03265 0.54 -0.5
768,925 - CA264_03265 0.54 -1.1
768,928 + CA264_03265 0.55 +0.4
768,929 - CA264_03265 0.55 -0.4
768,982 - CA264_03265 0.58 -1.3
768,984 + CA264_03265 0.58 -0.4
768,985 - CA264_03265 0.58 +0.5
769,003 - CA264_03265 0.59 +1.3
769,022 - CA264_03265 0.61 -0.5
769,025 - CA264_03265 0.61 +0.9
769,036 + CA264_03265 0.62 +0.5
769,037 - CA264_03265 0.62 -2.1
769,037 - CA264_03265 0.62 -1.3

Or see this region's nucleotide sequence