Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03215 and CA264_03220 are separated by 359 nucleotides CA264_03220 and CA264_03225 are separated by 102 nucleotides
CA264_03215: CA264_03215 - TonB-dependent receptor, at 755,289 to 757,721
_03215
CA264_03220: CA264_03220 - hypothetical protein, at 758,081 to 758,713
_03220
CA264_03225: CA264_03225 - hypothetical protein, at 758,816 to 760,012
_03225
Position (kb) 758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 757.271 kb on - strand, within CA264_03215 at 757.335 kb on - strand, within CA264_03215 at 757.457 kb on + strand, within CA264_03215 at 757.468 kb on + strand, within CA264_03215 at 757.469 kb on - strand, within CA264_03215 at 757.493 kb on + strand at 757.494 kb on - strand at 757.494 kb on - strand at 757.495 kb on + strand at 757.496 kb on - strand at 757.496 kb on - strand at 757.556 kb on + strand at 757.630 kb on - strand at 757.630 kb on - strand at 757.676 kb on + strand at 757.709 kb on - strand at 757.722 kb on - strand at 757.722 kb on - strand at 757.758 kb on - strand at 757.859 kb on - strand at 757.859 kb on - strand at 757.886 kb on + strand at 757.897 kb on + strand at 757.907 kb on + strand at 757.907 kb on + strand at 757.908 kb on - strand at 758.082 kb on + strand at 758.083 kb on - strand at 758.083 kb on - strand at 758.083 kb on - strand at 758.211 kb on + strand, within CA264_03220 at 758.212 kb on - strand, within CA264_03220 at 758.215 kb on - strand, within CA264_03220 at 758.365 kb on - strand, within CA264_03220 at 758.495 kb on + strand, within CA264_03220 at 758.495 kb on + strand, within CA264_03220 at 758.495 kb on + strand, within CA264_03220 at 758.539 kb on + strand, within CA264_03220 at 758.540 kb on - strand, within CA264_03220 at 758.628 kb on - strand, within CA264_03220 at 758.665 kb on + strand at 758.720 kb on + strand at 758.730 kb on + strand at 758.741 kb on + strand at 758.742 kb on - strand at 758.824 kb on + strand at 758.871 kb on + strand at 758.880 kb on + strand at 759.108 kb on + strand, within CA264_03225 at 759.144 kb on - strand, within CA264_03225 at 759.144 kb on - strand, within CA264_03225 at 759.346 kb on - strand, within CA264_03225 at 759.377 kb on + strand, within CA264_03225 at 759.377 kb on + strand, within CA264_03225 at 759.377 kb on + strand, within CA264_03225 at 759.377 kb on + strand, within CA264_03225 at 759.395 kb on + strand, within CA264_03225 at 759.403 kb on + strand, within CA264_03225 at 759.569 kb on + strand, within CA264_03225 at 759.683 kb on + strand, within CA264_03225 at 759.684 kb on - strand, within CA264_03225
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 757,271 - CA264_03215 0.81 -0.7 757,335 - CA264_03215 0.84 +0.2 757,457 + CA264_03215 0.89 +0.6 757,468 + CA264_03215 0.90 -0.4 757,469 - CA264_03215 0.90 +1.4 757,493 + +0.1 757,494 - +0.6 757,494 - -0.1 757,495 + -0.1 757,496 - +2.1 757,496 - -0.9 757,556 + +0.1 757,630 - -0.6 757,630 - +0.6 757,676 + +0.4 757,709 - +0.3 757,722 - -0.3 757,722 - +0.1 757,758 - +1.8 757,859 - -1.2 757,859 - -1.0 757,886 + -0.5 757,897 + -1.1 757,907 + -0.4 757,907 + -1.1 757,908 - -0.3 758,082 + +0.0 758,083 - -0.9 758,083 - +1.0 758,083 - -1.3 758,211 + CA264_03220 0.21 -0.8 758,212 - CA264_03220 0.21 -0.5 758,215 - CA264_03220 0.21 -1.0 758,365 - CA264_03220 0.45 -0.7 758,495 + CA264_03220 0.65 -0.7 758,495 + CA264_03220 0.65 -0.7 758,495 + CA264_03220 0.65 -1.6 758,539 + CA264_03220 0.72 +0.6 758,540 - CA264_03220 0.73 -1.6 758,628 - CA264_03220 0.86 -2.6 758,665 + -0.8 758,720 + -0.4 758,730 + -1.3 758,741 + -0.6 758,742 - +0.2 758,824 + +1.1 758,871 + +1.2 758,880 + -0.5 759,108 + CA264_03225 0.24 +0.3 759,144 - CA264_03225 0.27 -0.2 759,144 - CA264_03225 0.27 +1.0 759,346 - CA264_03225 0.44 +1.5 759,377 + CA264_03225 0.47 -0.8 759,377 + CA264_03225 0.47 -1.9 759,377 + CA264_03225 0.47 -1.8 759,377 + CA264_03225 0.47 -0.9 759,395 + CA264_03225 0.48 +0.8 759,403 + CA264_03225 0.49 -0.5 759,569 + CA264_03225 0.63 +0.6 759,683 + CA264_03225 0.72 -1.0 759,684 - CA264_03225 0.73 -0.9
Or see this region's nucleotide sequence