Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02970

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02960 and CA264_02965 are separated by 28 nucleotidesCA264_02965 and CA264_02970 are separated by 154 nucleotidesCA264_02970 and CA264_02975 are separated by 57 nucleotides CA264_02960: CA264_02960 - glycosyltransferase, at 680,708 to 681,481 _02960 CA264_02965: CA264_02965 - hypothetical protein, at 681,510 to 681,707 _02965 CA264_02970: CA264_02970 - glucose-1-phosphate cytidylyltransferase, at 681,862 to 682,665 _02970 CA264_02975: CA264_02975 - NAD-dependent epimerase, at 682,723 to 683,808 _02975 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.978 kb on - strand, within CA264_02960at 680.978 kb on - strand, within CA264_02960at 681.029 kb on + strand, within CA264_02960at 681.284 kb on + strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.354 kb on - strand, within CA264_02960at 681.476 kb on - strandat 681.480 kb on - strandat 681.480 kb on - strandat 681.537 kb on + strand, within CA264_02965at 681.537 kb on + strand, within CA264_02965at 681.538 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.593 kb on + strand, within CA264_02965at 681.594 kb on - strand, within CA264_02965at 681.607 kb on - strand, within CA264_02965at 681.672 kb on + strand, within CA264_02965at 681.673 kb on - strand, within CA264_02965at 681.677 kb on - strand, within CA264_02965at 681.719 kb on + strandat 681.746 kb on + strandat 681.846 kb on + strandat 681.854 kb on + strandat 681.858 kb on - strandat 681.859 kb on + strandat 681.860 kb on - strandat 681.874 kb on - strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.980 kb on + strand, within CA264_02970at 681.980 kb on + strand, within CA264_02970at 681.981 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 682.070 kb on - strand, within CA264_02970at 682.221 kb on + strand, within CA264_02970at 682.462 kb on + strand, within CA264_02970at 682.463 kb on - strand, within CA264_02970at 682.664 kb on - strandat 682.664 kb on - strandat 682.703 kb on + strandat 682.703 kb on + strandat 682.706 kb on + strandat 682.706 kb on + strandat 682.707 kb on - strandat 682.708 kb on + strandat 682.708 kb on + strandat 682.708 kb on + strandat 682.710 kb on + strandat 682.711 kb on - strandat 682.711 kb on - strandat 682.711 kb on - strandat 682.811 kb on + strandat 682.811 kb on + strandat 682.812 kb on - strandat 683.009 kb on + strand, within CA264_02975at 683.014 kb on + strand, within CA264_02975at 683.015 kb on - strand, within CA264_02975at 683.015 kb on - strand, within CA264_02975at 683.017 kb on - strand, within CA264_02975at 683.047 kb on - strand, within CA264_02975at 683.095 kb on + strand, within CA264_02975at 683.095 kb on + strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.367 kb on - strand, within CA264_02975at 683.400 kb on + strand, within CA264_02975at 683.401 kb on - strand, within CA264_02975at 683.501 kb on + strand, within CA264_02975at 683.502 kb on - strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.558 kb on - strand, within CA264_02975at 683.565 kb on - strand, within CA264_02975at 683.580 kb on + strand, within CA264_02975at 683.612 kb on - strand, within CA264_02975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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680,978 - CA264_02960 0.35 -0.8
680,978 - CA264_02960 0.35 -1.6
681,029 + CA264_02960 0.41 -1.0
681,284 + CA264_02960 0.74 +1.3
681,285 - CA264_02960 0.75 +0.0
681,285 - CA264_02960 0.75 +0.4
681,285 - CA264_02960 0.75 +0.4
681,285 - CA264_02960 0.75 -1.7
681,294 - CA264_02960 0.76 -1.0
681,294 - CA264_02960 0.76 -0.5
681,294 - CA264_02960 0.76 -0.8
681,354 - CA264_02960 0.83 -0.1
681,476 - -0.4
681,480 - +1.2
681,480 - -1.0
681,537 + CA264_02965 0.14 -0.5
681,537 + CA264_02965 0.14 -0.2
681,538 - CA264_02965 0.14 -0.4
681,559 - CA264_02965 0.25 -2.0
681,559 - CA264_02965 0.25 -1.1
681,591 + CA264_02965 0.41 +0.0
681,591 + CA264_02965 0.41 -0.4
681,593 + CA264_02965 0.42 -1.6
681,594 - CA264_02965 0.42 +0.0
681,607 - CA264_02965 0.49 -1.1
681,672 + CA264_02965 0.82 -0.2
681,673 - CA264_02965 0.82 -0.4
681,677 - CA264_02965 0.84 +0.4
681,719 + +1.1
681,746 + +0.5
681,846 + +0.0
681,854 + +0.2
681,858 - +2.7
681,859 + -0.5
681,860 - -0.6
681,874 - +0.4
681,875 + -1.8
681,875 + -0.3
681,875 + -0.6
681,980 + CA264_02970 0.15 +0.7
681,980 + CA264_02970 0.15 -1.0
681,981 - CA264_02970 0.15 -1.0
681,983 - CA264_02970 0.15 -1.5
681,983 - CA264_02970 0.15 -0.4
681,992 - CA264_02970 0.16 -1.4
681,992 - CA264_02970 0.16 +0.1
682,070 - CA264_02970 0.26 -0.4
682,221 + CA264_02970 0.45 -0.2
682,462 + CA264_02970 0.75 -0.3
682,463 - CA264_02970 0.75 -2.3
682,664 - +0.3
682,664 - -0.0
682,703 + -0.1
682,703 + +0.2
682,706 + -1.7
682,706 + -1.4
682,707 - +0.6
682,708 + -1.1
682,708 + -0.3
682,708 + -1.6
682,710 + -0.2
682,711 - -0.9
682,711 - -0.6
682,711 - +0.0
682,811 + -0.9
682,811 + -0.4
682,812 - -0.4
683,009 + CA264_02975 0.26 -0.6
683,014 + CA264_02975 0.27 +0.1
683,015 - CA264_02975 0.27 -0.4
683,015 - CA264_02975 0.27 -0.7
683,017 - CA264_02975 0.27 -0.2
683,047 - CA264_02975 0.30 +0.4
683,095 + CA264_02975 0.34 -1.6
683,095 + CA264_02975 0.34 +0.0
683,096 - CA264_02975 0.34 +0.4
683,096 - CA264_02975 0.34 -0.5
683,096 - CA264_02975 0.34 -1.2
683,096 - CA264_02975 0.34 -0.2
683,367 - CA264_02975 0.59 +0.2
683,400 + CA264_02975 0.62 -0.4
683,401 - CA264_02975 0.62 -1.1
683,501 + CA264_02975 0.72 -0.3
683,502 - CA264_02975 0.72 -0.7
683,557 + CA264_02975 0.77 -0.6
683,557 + CA264_02975 0.77 -1.2
683,558 - CA264_02975 0.77 +0.4
683,565 - CA264_02975 0.78 -0.4
683,580 + CA264_02975 0.79 +0.7
683,612 - CA264_02975 0.82 -1.1

Or see this region's nucleotide sequence