Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02605

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02600 and CA264_02605 are separated by 154 nucleotidesCA264_02605 and CA264_02610 are separated by 2 nucleotides CA264_02600: CA264_02600 - DsbA family protein, at 603,339 to 603,968 _02600 CA264_02605: CA264_02605 - hypothetical protein, at 604,123 to 604,482 _02605 CA264_02610: CA264_02610 - cation transporter, at 604,485 to 605,396 _02610 Position (kb) 604 605Strain fitness (log2 ratio) -2 -1 0 1at 603.131 kb on - strandat 603.137 kb on + strandat 603.144 kb on + strandat 603.145 kb on - strandat 603.152 kb on - strandat 603.226 kb on - strandat 603.226 kb on - strandat 603.302 kb on - strandat 603.360 kb on - strandat 603.372 kb on + strandat 603.530 kb on - strand, within CA264_02600at 603.530 kb on - strand, within CA264_02600at 603.530 kb on - strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.565 kb on - strand, within CA264_02600at 603.607 kb on + strand, within CA264_02600at 603.844 kb on + strand, within CA264_02600at 603.868 kb on - strand, within CA264_02600at 603.879 kb on + strand, within CA264_02600at 603.880 kb on - strand, within CA264_02600at 603.922 kb on - strandat 603.999 kb on + strandat 603.999 kb on + strandat 604.000 kb on - strandat 604.007 kb on + strandat 604.007 kb on + strandat 604.008 kb on - strandat 604.008 kb on - strandat 604.011 kb on + strandat 604.011 kb on + strandat 604.073 kb on + strandat 604.079 kb on + strandat 604.079 kb on + strandat 604.080 kb on - strandat 604.120 kb on + strandat 604.120 kb on + strandat 604.121 kb on - strandat 604.122 kb on + strandat 604.122 kb on + strandat 604.122 kb on + strandat 604.123 kb on - strandat 604.123 kb on - strandat 604.172 kb on + strand, within CA264_02605at 604.173 kb on - strand, within CA264_02605at 604.415 kb on + strand, within CA264_02605at 604.435 kb on + strand, within CA264_02605at 604.436 kb on - strand, within CA264_02605at 604.480 kb on + strandat 604.480 kb on + strandat 604.481 kb on - strandat 604.481 kb on - strandat 604.481 kb on - strandat 604.488 kb on + strandat 604.489 kb on - strandat 604.489 kb on - strandat 604.539 kb on + strandat 604.539 kb on + strandat 604.539 kb on + strandat 604.548 kb on + strandat 604.548 kb on + strandat 604.651 kb on + strand, within CA264_02610at 604.651 kb on + strand, within CA264_02610at 604.652 kb on - strand, within CA264_02610at 604.704 kb on + strand, within CA264_02610at 604.706 kb on + strand, within CA264_02610at 604.739 kb on + strand, within CA264_02610at 604.739 kb on + strand, within CA264_02610at 604.740 kb on - strand, within CA264_02610at 604.804 kb on + strand, within CA264_02610at 604.805 kb on - strand, within CA264_02610at 604.874 kb on + strand, within CA264_02610at 604.995 kb on - strand, within CA264_02610at 605.034 kb on + strand, within CA264_02610at 605.035 kb on - strand, within CA264_02610at 605.035 kb on - strand, within CA264_02610at 605.079 kb on - strand, within CA264_02610at 605.142 kb on - strand, within CA264_02610at 605.195 kb on - strand, within CA264_02610at 605.266 kb on - strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.293 kb on - strand, within CA264_02610at 605.397 kb on - strandat 605.397 kb on - strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.425 kb on - strandat 605.425 kb on - strandat 605.429 kb on - strandat 605.468 kb on + strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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603,131 - -0.4
603,137 + -1.5
603,144 + -0.7
603,145 - -0.3
603,152 - -2.2
603,226 - -0.5
603,226 - -1.0
603,302 - -0.7
603,360 - +0.1
603,372 + -0.2
603,530 - CA264_02600 0.30 +0.1
603,530 - CA264_02600 0.30 -2.4
603,530 - CA264_02600 0.30 -0.5
603,564 + CA264_02600 0.36 +0.3
603,564 + CA264_02600 0.36 -0.6
603,564 + CA264_02600 0.36 -0.5
603,564 + CA264_02600 0.36 -0.3
603,565 - CA264_02600 0.36 -0.2
603,607 + CA264_02600 0.43 +0.8
603,844 + CA264_02600 0.80 -1.0
603,868 - CA264_02600 0.84 +0.1
603,879 + CA264_02600 0.86 +0.3
603,880 - CA264_02600 0.86 +1.0
603,922 - +0.8
603,999 + +0.1
603,999 + +1.7
604,000 - +0.6
604,007 + -0.7
604,007 + -1.0
604,008 - -0.7
604,008 - -0.7
604,011 + -0.4
604,011 + +0.4
604,073 + -0.3
604,079 + +1.2
604,079 + -2.0
604,080 - -0.9
604,120 + -0.7
604,120 + -0.7
604,121 - -1.2
604,122 + -0.5
604,122 + -1.1
604,122 + -0.2
604,123 - +0.1
604,123 - -0.6
604,172 + CA264_02605 0.14 -0.8
604,173 - CA264_02605 0.14 -0.7
604,415 + CA264_02605 0.81 -0.8
604,435 + CA264_02605 0.87 -0.8
604,436 - CA264_02605 0.87 -0.7
604,480 + -0.1
604,480 + +0.4
604,481 - +0.6
604,481 - -0.4
604,481 - -0.7
604,488 + -0.6
604,489 - -1.0
604,489 - -0.4
604,539 + -0.8
604,539 + -0.1
604,539 + -1.5
604,548 + -0.1
604,548 + -0.0
604,651 + CA264_02610 0.18 +1.7
604,651 + CA264_02610 0.18 -0.5
604,652 - CA264_02610 0.18 -1.5
604,704 + CA264_02610 0.24 +0.4
604,706 + CA264_02610 0.24 +0.1
604,739 + CA264_02610 0.28 -0.5
604,739 + CA264_02610 0.28 +0.1
604,740 - CA264_02610 0.28 -0.3
604,804 + CA264_02610 0.35 -0.9
604,805 - CA264_02610 0.35 -0.9
604,874 + CA264_02610 0.43 -0.3
604,995 - CA264_02610 0.56 -1.2
605,034 + CA264_02610 0.60 -0.3
605,035 - CA264_02610 0.60 -0.6
605,035 - CA264_02610 0.60 +0.4
605,079 - CA264_02610 0.65 -0.9
605,142 - CA264_02610 0.72 -1.5
605,195 - CA264_02610 0.78 -0.8
605,266 - CA264_02610 0.86 -0.2
605,292 + CA264_02610 0.88 -0.2
605,292 + CA264_02610 0.88 -0.4
605,293 - CA264_02610 0.89 +0.1
605,397 - -0.3
605,397 - -0.3
605,424 + +0.4
605,424 + +0.3
605,424 + +0.2
605,424 + -0.6
605,424 + +0.7
605,425 - -0.1
605,425 - -1.9
605,429 - +0.4
605,468 + -0.8
605,469 - -0.6
605,469 - -0.9
605,469 - -1.0
605,469 - +0.5

Or see this region's nucleotide sequence