Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02575

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02560 and CA264_02565 are separated by 102 nucleotidesCA264_02565 and CA264_02570 are separated by 11 nucleotidesCA264_02570 and CA264_02575 are separated by 236 nucleotidesCA264_02575 and CA264_02580 are separated by 86 nucleotidesCA264_02580 and CA264_02585 are separated by 7 nucleotides CA264_02560: CA264_02560 - DUF4153 domain-containing protein, at 598,093 to 599,337 _02560 CA264_02565: CA264_02565 - hypothetical protein, at 599,440 to 599,706 _02565 CA264_02570: CA264_02570 - hypothetical protein, at 599,718 to 600,008 _02570 CA264_02575: CA264_02575 - potassium transporter KefB, at 600,245 to 600,583 _02575 CA264_02580: CA264_02580 - transcriptional regulator, at 600,670 to 600,978 _02580 CA264_02585: CA264_02585 - hypothetical protein, at 600,986 to 601,609 _02585 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1at 599.320 kb on + strandat 599.478 kb on + strand, within CA264_02565at 599.494 kb on + strand, within CA264_02565at 599.573 kb on + strand, within CA264_02565at 599.681 kb on + strandat 599.681 kb on + strandat 599.681 kb on + strandat 599.746 kb on - strandat 599.788 kb on - strand, within CA264_02570at 599.890 kb on - strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.932 kb on - strand, within CA264_02570at 599.985 kb on - strandat 599.985 kb on - strandat 600.008 kb on + strandat 600.078 kb on - strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.136 kb on + strandat 600.171 kb on - strandat 600.191 kb on + strandat 600.192 kb on - strandat 600.221 kb on - strandat 600.303 kb on + strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.305 kb on + strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.324 kb on + strand, within CA264_02575at 600.428 kb on - strand, within CA264_02575at 600.589 kb on + strandat 600.599 kb on - strandat 600.603 kb on + strandat 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.716 kb on - strand, within CA264_02580at 600.759 kb on - strand, within CA264_02580at 600.951 kb on + strandat 600.955 kb on + strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.957 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.965 kb on - strandat 600.980 kb on + strandat 601.005 kb on + strandat 601.007 kb on + strandat 601.008 kb on - strandat 601.020 kb on + strandat 601.020 kb on + strandat 601.025 kb on + strandat 601.025 kb on + strandat 601.025 kb on + strandat 601.026 kb on - strandat 601.081 kb on - strand, within CA264_02585at 601.157 kb on - strand, within CA264_02585at 601.196 kb on + strand, within CA264_02585at 601.226 kb on + strand, within CA264_02585at 601.271 kb on + strand, within CA264_02585at 601.440 kb on + strand, within CA264_02585at 601.440 kb on + strand, within CA264_02585at 601.441 kb on - strand, within CA264_02585at 601.445 kb on + strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.487 kb on + strand, within CA264_02585at 601.559 kb on - strandat 601.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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599,320 + -2.5
599,478 + CA264_02565 0.14 -0.9
599,494 + CA264_02565 0.20 -0.5
599,573 + CA264_02565 0.50 -1.6
599,681 + -1.7
599,681 + -0.5
599,681 + -1.5
599,746 - -0.6
599,788 - CA264_02570 0.24 -0.6
599,890 - CA264_02570 0.59 -0.6
599,931 + CA264_02570 0.73 +1.7
599,931 + CA264_02570 0.73 -0.7
599,932 - CA264_02570 0.74 -1.2
599,985 - +1.3
599,985 - -0.8
600,008 + -0.2
600,078 - +0.1
600,099 + -0.4
600,099 + -1.9
600,099 + +0.1
600,136 + -1.0
600,171 - -0.7
600,191 + -2.7
600,192 - +0.9
600,221 - -1.3
600,303 + CA264_02575 0.17 -0.6
600,304 - CA264_02575 0.17 -0.9
600,304 - CA264_02575 0.17 -0.4
600,305 + CA264_02575 0.18 -0.7
600,323 - CA264_02575 0.23 -1.2
600,323 - CA264_02575 0.23 -1.0
600,324 + CA264_02575 0.23 -0.9
600,428 - CA264_02575 0.54 -0.8
600,589 + -0.5
600,599 - -0.3
600,603 + +0.5
600,715 + CA264_02580 0.15 +0.1
600,715 + CA264_02580 0.15 +0.1
600,715 + CA264_02580 0.15 +0.6
600,716 - CA264_02580 0.15 -0.8
600,759 - CA264_02580 0.29 +0.3
600,951 + +0.7
600,955 + -1.3
600,955 + -0.6
600,956 - -1.3
600,956 - +0.8
600,957 + -0.4
600,964 + -0.6
600,964 + -1.3
600,964 + -2.5
600,965 - +0.0
600,980 + +0.1
601,005 + +0.1
601,007 + -2.0
601,008 - -0.2
601,020 + +1.3
601,020 + -2.0
601,025 + -0.4
601,025 + -0.1
601,025 + -0.1
601,026 - -1.1
601,081 - CA264_02585 0.15 -1.7
601,157 - CA264_02585 0.27 +1.6
601,196 + CA264_02585 0.34 -0.1
601,226 + CA264_02585 0.38 -1.7
601,271 + CA264_02585 0.46 -0.9
601,440 + CA264_02585 0.73 +0.1
601,440 + CA264_02585 0.73 -0.6
601,441 - CA264_02585 0.73 -0.5
601,445 + CA264_02585 0.74 -0.2
601,446 - CA264_02585 0.74 +0.4
601,446 - CA264_02585 0.74 +0.3
601,487 + CA264_02585 0.80 +0.1
601,559 - -1.0
601,559 - -0.4

Or see this region's nucleotide sequence