Strain Fitness in Agrobacterium fabrum C58 around Atu5507

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5506 and Atu5507 are separated by 246 nucleotidesAtu5507 and Atu5508 are separated by 55 nucleotides Atu5506: Atu5506 - two component sensor kinase, at 496,956 to 498,314 Atu5506 Atu5507: Atu5507 - gamma-glutamyltranspeptidase, at 498,561 to 500,318 Atu5507 Atu5508: Atu5508 - glutathione S-transferase, at 500,374 to 501,072 Atu5508 Position (kb) 498 499 500 501Strain fitness (log2 ratio) -1 0 1 2 3at 497.578 kb on - strand, within Atu5506at 497.622 kb on - strand, within Atu5506at 497.684 kb on + strand, within Atu5506at 497.700 kb on - strand, within Atu5506at 497.781 kb on - strand, within Atu5506at 497.860 kb on + strand, within Atu5506at 497.865 kb on + strand, within Atu5506at 497.996 kb on - strand, within Atu5506at 498.007 kb on + strand, within Atu5506at 498.081 kb on + strand, within Atu5506at 498.094 kb on - strand, within Atu5506at 498.107 kb on + strand, within Atu5506at 498.150 kb on - strand, within Atu5506at 498.157 kb on - strand, within Atu5506at 498.184 kb on + strandat 498.288 kb on - strandat 498.288 kb on - strandat 498.424 kb on + strandat 498.432 kb on - strandat 498.432 kb on - strandat 498.447 kb on + strandat 498.558 kb on - strandat 498.633 kb on + strandat 498.772 kb on + strand, within Atu5507at 498.792 kb on + strand, within Atu5507at 498.826 kb on + strand, within Atu5507at 498.826 kb on + strand, within Atu5507at 498.855 kb on + strand, within Atu5507at 498.863 kb on - strand, within Atu5507at 498.925 kb on + strand, within Atu5507at 498.994 kb on - strand, within Atu5507at 499.004 kb on + strand, within Atu5507at 499.041 kb on + strand, within Atu5507at 499.068 kb on - strand, within Atu5507at 499.110 kb on - strand, within Atu5507at 499.127 kb on - strand, within Atu5507at 499.206 kb on + strand, within Atu5507at 499.214 kb on - strand, within Atu5507at 499.217 kb on - strand, within Atu5507at 499.316 kb on + strand, within Atu5507at 499.324 kb on - strand, within Atu5507at 499.324 kb on - strand, within Atu5507at 499.324 kb on - strand, within Atu5507at 499.324 kb on - strand, within Atu5507at 499.324 kb on - strand, within Atu5507at 499.345 kb on + strand, within Atu5507at 499.403 kb on + strand, within Atu5507at 499.411 kb on - strand, within Atu5507at 499.431 kb on - strand, within Atu5507at 499.552 kb on + strand, within Atu5507at 499.571 kb on - strand, within Atu5507at 499.637 kb on + strand, within Atu5507at 499.660 kb on + strand, within Atu5507at 499.699 kb on - strand, within Atu5507at 499.730 kb on - strand, within Atu5507at 499.813 kb on - strand, within Atu5507at 499.911 kb on + strand, within Atu5507at 499.976 kb on + strand, within Atu5507at 500.085 kb on - strand, within Atu5507at 500.129 kb on - strand, within Atu5507at 500.255 kb on - strandat 500.283 kb on + strandat 500.322 kb on - strandat 500.352 kb on + strandat 500.389 kb on - strandat 500.459 kb on + strand, within Atu5508at 500.684 kb on + strand, within Atu5508at 500.693 kb on + strand, within Atu5508at 500.701 kb on - strand, within Atu5508at 500.728 kb on + strand, within Atu5508at 500.737 kb on + strand, within Atu5508at 500.827 kb on + strand, within Atu5508at 500.844 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.994 kb on - strand, within Atu5508at 501.010 kb on + strandat 501.010 kb on + strandat 501.020 kb on - strandat 501.077 kb on + strandat 501.102 kb on - strandat 501.139 kb on - strandat 501.147 kb on - strandat 501.167 kb on + strandat 501.168 kb on + strandat 501.168 kb on + strandat 501.183 kb on + strandat 501.183 kb on + strandat 501.201 kb on - strandat 501.268 kb on + strandat 501.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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497,578 - Atu5506 0.46 -0.5
497,622 - Atu5506 0.49 +0.5
497,684 + Atu5506 0.54 +0.2
497,700 - Atu5506 0.55 +0.1
497,781 - Atu5506 0.61 +1.7
497,860 + Atu5506 0.67 +0.5
497,865 + Atu5506 0.67 -0.1
497,996 - Atu5506 0.77 +1.1
498,007 + Atu5506 0.77 +0.9
498,081 + Atu5506 0.83 +0.9
498,094 - Atu5506 0.84 +0.1
498,107 + Atu5506 0.85 -0.6
498,150 - Atu5506 0.88 +0.5
498,157 - Atu5506 0.88 +0.5
498,184 + +0.4
498,288 - +0.5
498,288 - +0.4
498,424 + +0.1
498,432 - +0.7
498,432 - -0.0
498,447 + +0.6
498,558 - +1.5
498,633 + +1.7
498,772 + Atu5507 0.12 -0.3
498,792 + Atu5507 0.13 +0.1
498,826 + Atu5507 0.15 +2.5
498,826 + Atu5507 0.15 +0.4
498,855 + Atu5507 0.17 +0.2
498,863 - Atu5507 0.17 +3.0
498,925 + Atu5507 0.21 +0.9
498,994 - Atu5507 0.25 +0.6
499,004 + Atu5507 0.25 +0.5
499,041 + Atu5507 0.27 +1.1
499,068 - Atu5507 0.29 +2.0
499,110 - Atu5507 0.31 +0.3
499,127 - Atu5507 0.32 +0.7
499,206 + Atu5507 0.37 +0.5
499,214 - Atu5507 0.37 +1.1
499,217 - Atu5507 0.37 +0.5
499,316 + Atu5507 0.43 +0.3
499,324 - Atu5507 0.43 +0.7
499,324 - Atu5507 0.43 +0.5
499,324 - Atu5507 0.43 +0.5
499,324 - Atu5507 0.43 +0.5
499,324 - Atu5507 0.43 +0.6
499,345 + Atu5507 0.45 +0.1
499,403 + Atu5507 0.48 +0.5
499,411 - Atu5507 0.48 +3.5
499,431 - Atu5507 0.49 +2.2
499,552 + Atu5507 0.56 +0.2
499,571 - Atu5507 0.57 +0.8
499,637 + Atu5507 0.61 +0.9
499,660 + Atu5507 0.63 +2.9
499,699 - Atu5507 0.65 +0.4
499,730 - Atu5507 0.66 +1.3
499,813 - Atu5507 0.71 +0.8
499,911 + Atu5507 0.77 +2.5
499,976 + Atu5507 0.80 -0.1
500,085 - Atu5507 0.87 +0.5
500,129 - Atu5507 0.89 +1.2
500,255 - +0.2
500,283 + -0.9
500,322 - +0.9
500,352 + +1.0
500,389 - -0.9
500,459 + Atu5508 0.12 +2.0
500,684 + Atu5508 0.44 +1.5
500,693 + Atu5508 0.46 +0.6
500,701 - Atu5508 0.47 +0.4
500,728 + Atu5508 0.51 +2.3
500,737 + Atu5508 0.52 +0.0
500,827 + Atu5508 0.65 +0.4
500,844 + Atu5508 0.67 +1.0
500,950 + Atu5508 0.82 -0.6
500,950 + Atu5508 0.82 -0.4
500,952 + Atu5508 0.83 -0.3
500,952 + Atu5508 0.83 +2.0
500,958 - Atu5508 0.84 +0.3
500,958 - Atu5508 0.84 +0.0
500,960 - Atu5508 0.84 +0.1
500,960 - Atu5508 0.84 -0.8
500,960 - Atu5508 0.84 +0.5
500,960 - Atu5508 0.84 +0.8
500,960 - Atu5508 0.84 +2.3
500,994 - Atu5508 0.89 +0.5
501,010 + +0.6
501,010 + -1.7
501,020 - +0.4
501,077 + +0.2
501,102 - +2.5
501,139 - +0.6
501,147 - -1.3
501,167 + -0.6
501,168 + -0.1
501,168 + +0.2
501,183 + -0.4
501,183 + -1.3
501,201 - +2.5
501,268 + -0.1
501,268 + -0.2

Or see this region's nucleotide sequence