Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4130 and Echvi_4131 are separated by 26 nucleotides Echvi_4131 and Echvi_4132 are separated by 6 nucleotides Echvi_4132 and Echvi_4133 are separated by 139 nucleotides
Echvi_4130: Echvi_4130 - hypothetical protein, at 4,947,322 to 4,948,083
_4130
Echvi_4131: Echvi_4131 - Predicted membrane protein, at 4,948,110 to 4,948,565
_4131
Echvi_4132: Echvi_4132 - Protein of unknown function (DUF3347)., at 4,948,572 to 4,949,102
_4132
Echvi_4133: Echvi_4133 - RND family efflux transporter, MFP subunit, at 4,949,242 to 4,951,059
_4133
Position (kb)
4948
4949
4950 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4947.583 kb on + strand, within Echvi_4130 at 4947.583 kb on + strand, within Echvi_4130 at 4947.583 kb on + strand, within Echvi_4130 at 4947.584 kb on - strand, within Echvi_4130 at 4947.584 kb on - strand, within Echvi_4130 at 4947.584 kb on - strand, within Echvi_4130 at 4947.584 kb on - strand, within Echvi_4130 at 4947.606 kb on + strand, within Echvi_4130 at 4947.625 kb on + strand, within Echvi_4130 at 4947.625 kb on + strand, within Echvi_4130 at 4947.626 kb on - strand, within Echvi_4130 at 4947.639 kb on + strand, within Echvi_4130 at 4947.734 kb on - strand, within Echvi_4130 at 4947.802 kb on - strand, within Echvi_4130 at 4947.820 kb on + strand, within Echvi_4130 at 4947.821 kb on - strand, within Echvi_4130 at 4947.821 kb on - strand, within Echvi_4130 at 4947.822 kb on + strand, within Echvi_4130 at 4947.858 kb on + strand, within Echvi_4130 at 4947.858 kb on + strand, within Echvi_4130 at 4947.858 kb on + strand, within Echvi_4130 at 4947.900 kb on + strand, within Echvi_4130 at 4948.024 kb on - strand at 4948.072 kb on - strand at 4948.072 kb on - strand at 4948.078 kb on - strand at 4948.078 kb on - strand at 4948.132 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.136 kb on + strand at 4948.178 kb on + strand, within Echvi_4131 at 4948.295 kb on + strand, within Echvi_4131 at 4948.295 kb on + strand, within Echvi_4131 at 4948.296 kb on - strand, within Echvi_4131 at 4948.329 kb on + strand, within Echvi_4131 at 4948.347 kb on + strand, within Echvi_4131 at 4948.358 kb on + strand, within Echvi_4131 at 4948.358 kb on + strand, within Echvi_4131 at 4948.359 kb on - strand, within Echvi_4131 at 4948.362 kb on + strand, within Echvi_4131 at 4948.363 kb on - strand, within Echvi_4131 at 4948.363 kb on - strand, within Echvi_4131 at 4948.380 kb on + strand, within Echvi_4131 at 4948.385 kb on - strand, within Echvi_4131 at 4948.412 kb on + strand, within Echvi_4131 at 4948.415 kb on + strand, within Echvi_4131 at 4948.415 kb on + strand, within Echvi_4131 at 4948.416 kb on - strand, within Echvi_4131 at 4948.417 kb on + strand, within Echvi_4131 at 4948.417 kb on + strand, within Echvi_4131 at 4948.417 kb on + strand, within Echvi_4131 at 4948.418 kb on - strand, within Echvi_4131 at 4948.418 kb on - strand, within Echvi_4131 at 4948.418 kb on - strand, within Echvi_4131 at 4948.419 kb on + strand, within Echvi_4131 at 4948.433 kb on + strand, within Echvi_4131 at 4948.434 kb on - strand, within Echvi_4131 at 4948.504 kb on - strand, within Echvi_4131 at 4948.565 kb on + strand at 4948.574 kb on - strand at 4948.653 kb on + strand, within Echvi_4132 at 4948.661 kb on - strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.704 kb on + strand, within Echvi_4132 at 4948.705 kb on - strand, within Echvi_4132 at 4948.705 kb on - strand, within Echvi_4132 at 4948.705 kb on - strand, within Echvi_4132 at 4948.846 kb on - strand, within Echvi_4132 at 4948.854 kb on + strand, within Echvi_4132 at 4948.854 kb on + strand, within Echvi_4132 at 4948.865 kb on + strand, within Echvi_4132 at 4948.908 kb on + strand, within Echvi_4132 at 4948.911 kb on + strand, within Echvi_4132 at 4948.911 kb on + strand, within Echvi_4132 at 4948.911 kb on + strand, within Echvi_4132 at 4948.912 kb on - strand, within Echvi_4132 at 4948.929 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.931 kb on + strand, within Echvi_4132 at 4948.932 kb on - strand, within Echvi_4132 at 4948.932 kb on - strand, within Echvi_4132 at 4948.932 kb on - strand, within Echvi_4132 at 4948.933 kb on + strand, within Echvi_4132 at 4948.934 kb on - strand, within Echvi_4132 at 4948.934 kb on - strand, within Echvi_4132 at 4948.942 kb on + strand, within Echvi_4132 at 4948.942 kb on + strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.943 kb on - strand, within Echvi_4132 at 4948.981 kb on - strand, within Echvi_4132 at 4948.981 kb on - strand, within Echvi_4132 at 4948.981 kb on - strand, within Echvi_4132 at 4949.092 kb on - strand at 4949.135 kb on + strand at 4949.153 kb on + strand at 4949.163 kb on - strand at 4949.192 kb on + strand at 4949.294 kb on + strand at 4949.343 kb on + strand at 4949.343 kb on + strand at 4949.343 kb on + strand at 4949.458 kb on + strand, within Echvi_4133 at 4949.485 kb on + strand, within Echvi_4133 at 4949.485 kb on + strand, within Echvi_4133 at 4949.487 kb on + strand, within Echvi_4133 at 4949.487 kb on + strand, within Echvi_4133 at 4949.510 kb on + strand, within Echvi_4133 at 4949.526 kb on + strand, within Echvi_4133 at 4949.863 kb on + strand, within Echvi_4133 at 4949.905 kb on + strand, within Echvi_4133 at 4949.936 kb on - strand, within Echvi_4133 at 4949.953 kb on + strand, within Echvi_4133 at 4949.967 kb on + strand, within Echvi_4133 at 4949.967 kb on + strand, within Echvi_4133 at 4950.002 kb on + strand, within Echvi_4133 at 4950.002 kb on + strand, within Echvi_4133 at 4950.066 kb on + strand, within Echvi_4133
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 4,947,583 + Echvi_4130 0.34 +1.3 4,947,583 + Echvi_4130 0.34 -0.6 4,947,583 + Echvi_4130 0.34 +0.0 4,947,584 - Echvi_4130 0.34 +0.7 4,947,584 - Echvi_4130 0.34 -0.1 4,947,584 - Echvi_4130 0.34 -0.5 4,947,584 - Echvi_4130 0.34 +0.1 4,947,606 + Echvi_4130 0.37 +0.8 4,947,625 + Echvi_4130 0.40 +0.4 4,947,625 + Echvi_4130 0.40 -0.2 4,947,626 - Echvi_4130 0.40 +0.6 4,947,639 + Echvi_4130 0.42 -1.5 4,947,734 - Echvi_4130 0.54 +1.5 4,947,802 - Echvi_4130 0.63 +0.6 4,947,820 + Echvi_4130 0.65 -0.5 4,947,821 - Echvi_4130 0.65 +0.9 4,947,821 - Echvi_4130 0.65 +1.9 4,947,822 + Echvi_4130 0.66 +0.1 4,947,858 + Echvi_4130 0.70 +0.3 4,947,858 + Echvi_4130 0.70 -0.6 4,947,858 + Echvi_4130 0.70 -0.2 4,947,900 + Echvi_4130 0.76 +0.7 4,948,024 - -0.6 4,948,072 - +0.5 4,948,072 - +0.1 4,948,078 - -0.2 4,948,078 - -1.3 4,948,132 + +0.1 4,948,136 + -1.2 4,948,136 + +0.3 4,948,136 + -0.6 4,948,136 + -0.3 4,948,136 + +0.3 4,948,136 + -2.0 4,948,136 + -0.6 4,948,136 + -1.2 4,948,136 + -1.1 4,948,136 + +0.4 4,948,136 + +0.9 4,948,136 + +1.9 4,948,136 + -0.2 4,948,136 + +0.5 4,948,178 + Echvi_4131 0.15 -0.6 4,948,295 + Echvi_4131 0.41 +0.1 4,948,295 + Echvi_4131 0.41 +0.7 4,948,296 - Echvi_4131 0.41 +0.1 4,948,329 + Echvi_4131 0.48 +0.4 4,948,347 + Echvi_4131 0.52 -0.4 4,948,358 + Echvi_4131 0.54 +0.4 4,948,358 + Echvi_4131 0.54 -2.1 4,948,359 - Echvi_4131 0.55 -2.4 4,948,362 + Echvi_4131 0.55 +1.2 4,948,363 - Echvi_4131 0.55 +0.9 4,948,363 - Echvi_4131 0.55 +1.0 4,948,380 + Echvi_4131 0.59 +1.2 4,948,385 - Echvi_4131 0.60 -0.2 4,948,412 + Echvi_4131 0.66 -2.6 4,948,415 + Echvi_4131 0.67 -1.0 4,948,415 + Echvi_4131 0.67 +1.4 4,948,416 - Echvi_4131 0.67 -0.9 4,948,417 + Echvi_4131 0.67 -0.3 4,948,417 + Echvi_4131 0.67 -1.6 4,948,417 + Echvi_4131 0.67 +2.7 4,948,418 - Echvi_4131 0.68 -0.3 4,948,418 - Echvi_4131 0.68 +0.9 4,948,418 - Echvi_4131 0.68 -1.3 4,948,419 + Echvi_4131 0.68 -1.4 4,948,433 + Echvi_4131 0.71 +0.0 4,948,434 - Echvi_4131 0.71 +0.4 4,948,504 - Echvi_4131 0.86 +0.3 4,948,565 + -2.0 4,948,574 - +0.6 4,948,653 + Echvi_4132 0.15 -0.3 4,948,661 - Echvi_4132 0.17 +0.2 4,948,704 + Echvi_4132 0.25 +0.6 4,948,704 + Echvi_4132 0.25 +0.2 4,948,704 + Echvi_4132 0.25 +1.7 4,948,704 + Echvi_4132 0.25 +0.2 4,948,704 + Echvi_4132 0.25 +0.9 4,948,704 + Echvi_4132 0.25 -0.4 4,948,705 - Echvi_4132 0.25 -0.1 4,948,705 - Echvi_4132 0.25 +0.2 4,948,705 - Echvi_4132 0.25 +2.8 4,948,846 - Echvi_4132 0.52 -0.9 4,948,854 + Echvi_4132 0.53 -0.0 4,948,854 + Echvi_4132 0.53 +0.1 4,948,865 + Echvi_4132 0.55 +2.4 4,948,908 + Echvi_4132 0.63 +0.1 4,948,911 + Echvi_4132 0.64 +0.1 4,948,911 + Echvi_4132 0.64 +1.9 4,948,911 + Echvi_4132 0.64 -0.4 4,948,912 - Echvi_4132 0.64 +0.6 4,948,929 + Echvi_4132 0.67 -0.1 4,948,931 + Echvi_4132 0.68 -0.1 4,948,931 + Echvi_4132 0.68 -0.6 4,948,931 + Echvi_4132 0.68 +0.4 4,948,931 + Echvi_4132 0.68 +0.6 4,948,931 + Echvi_4132 0.68 +0.1 4,948,931 + Echvi_4132 0.68 +0.5 4,948,931 + Echvi_4132 0.68 -1.0 4,948,931 + Echvi_4132 0.68 -1.4 4,948,931 + Echvi_4132 0.68 +1.4 4,948,932 - Echvi_4132 0.68 -0.9 4,948,932 - Echvi_4132 0.68 +0.4 4,948,932 - Echvi_4132 0.68 +0.7 4,948,933 + Echvi_4132 0.68 -0.1 4,948,934 - Echvi_4132 0.68 -0.3 4,948,934 - Echvi_4132 0.68 +2.2 4,948,942 + Echvi_4132 0.70 +0.4 4,948,942 + Echvi_4132 0.70 -0.1 4,948,943 - Echvi_4132 0.70 -0.2 4,948,943 - Echvi_4132 0.70 +0.1 4,948,943 - Echvi_4132 0.70 -1.8 4,948,943 - Echvi_4132 0.70 -0.1 4,948,943 - Echvi_4132 0.70 -2.0 4,948,943 - Echvi_4132 0.70 +0.7 4,948,981 - Echvi_4132 0.77 -0.2 4,948,981 - Echvi_4132 0.77 +1.4 4,948,981 - Echvi_4132 0.77 +0.6 4,949,092 - +0.2 4,949,135 + -0.0 4,949,153 + +0.4 4,949,163 - -1.0 4,949,192 + +1.9 4,949,294 + -0.9 4,949,343 + -1.9 4,949,343 + +1.1 4,949,343 + -0.3 4,949,458 + Echvi_4133 0.12 +0.5 4,949,485 + Echvi_4133 0.13 -0.2 4,949,485 + Echvi_4133 0.13 -0.3 4,949,487 + Echvi_4133 0.13 +1.7 4,949,487 + Echvi_4133 0.13 -1.8 4,949,510 + Echvi_4133 0.15 -0.7 4,949,526 + Echvi_4133 0.16 +0.1 4,949,863 + Echvi_4133 0.34 -1.4 4,949,905 + Echvi_4133 0.36 -0.0 4,949,936 - Echvi_4133 0.38 -0.9 4,949,953 + Echvi_4133 0.39 +0.2 4,949,967 + Echvi_4133 0.40 +1.4 4,949,967 + Echvi_4133 0.40 +0.1 4,950,002 + Echvi_4133 0.42 +1.2 4,950,002 + Echvi_4133 0.42 -0.8 4,950,066 + Echvi_4133 0.45 -2.6
Or see this region's nucleotide sequence