Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2160

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2159 and Echvi_2160 are separated by 179 nucleotidesEchvi_2160 and Echvi_2161 are separated by 355 nucleotides Echvi_2159: Echvi_2159 - N-acetyl-beta-hexosaminidase, at 2,568,231 to 2,569,814 _2159 Echvi_2160: Echvi_2160 - Highly conserved protein containing a thioredoxin domain, at 2,569,994 to 2,571,223 _2160 Echvi_2161: Echvi_2161 - RNA polymerase sigma factor, sigma-70 family, at 2,571,579 to 2,572,181 _2161 Position (kb) 2569 2570 2571 2572Strain fitness (log2 ratio) -2 -1 0 1 2at 2569.044 kb on - strand, within Echvi_2159at 2569.206 kb on - strand, within Echvi_2159at 2569.269 kb on + strand, within Echvi_2159at 2569.276 kb on + strand, within Echvi_2159at 2569.276 kb on + strand, within Echvi_2159at 2569.277 kb on - strand, within Echvi_2159at 2569.277 kb on - strand, within Echvi_2159at 2569.277 kb on - strand, within Echvi_2159at 2569.279 kb on + strand, within Echvi_2159at 2569.280 kb on - strand, within Echvi_2159at 2569.466 kb on + strand, within Echvi_2159at 2569.518 kb on + strand, within Echvi_2159at 2569.526 kb on - strand, within Echvi_2159at 2569.536 kb on + strand, within Echvi_2159at 2569.705 kb on - strandat 2569.720 kb on + strandat 2569.721 kb on - strandat 2569.721 kb on - strandat 2569.788 kb on + strandat 2569.789 kb on - strandat 2569.791 kb on + strandat 2569.792 kb on - strandat 2569.846 kb on - strandat 2569.903 kb on + strandat 2569.944 kb on + strandat 2570.000 kb on + strandat 2570.037 kb on + strandat 2570.043 kb on + strandat 2570.052 kb on + strandat 2570.057 kb on - strandat 2570.063 kb on + strandat 2570.114 kb on - strandat 2570.145 kb on + strand, within Echvi_2160at 2570.145 kb on + strand, within Echvi_2160at 2570.146 kb on - strand, within Echvi_2160at 2570.146 kb on - strand, within Echvi_2160at 2570.189 kb on + strand, within Echvi_2160at 2570.189 kb on + strand, within Echvi_2160at 2570.190 kb on - strand, within Echvi_2160at 2570.194 kb on - strand, within Echvi_2160at 2570.224 kb on - strand, within Echvi_2160at 2570.280 kb on + strand, within Echvi_2160at 2570.308 kb on - strand, within Echvi_2160at 2570.316 kb on + strand, within Echvi_2160at 2570.342 kb on - strand, within Echvi_2160at 2570.388 kb on + strand, within Echvi_2160at 2570.389 kb on - strand, within Echvi_2160at 2570.422 kb on + strand, within Echvi_2160at 2570.423 kb on - strand, within Echvi_2160at 2570.423 kb on - strand, within Echvi_2160at 2570.423 kb on - strand, within Echvi_2160at 2570.423 kb on - strand, within Echvi_2160at 2570.431 kb on - strand, within Echvi_2160at 2570.539 kb on - strand, within Echvi_2160at 2570.539 kb on - strand, within Echvi_2160at 2570.575 kb on + strand, within Echvi_2160at 2570.578 kb on + strand, within Echvi_2160at 2570.578 kb on + strand, within Echvi_2160at 2570.579 kb on - strand, within Echvi_2160at 2570.579 kb on - strand, within Echvi_2160at 2570.579 kb on - strand, within Echvi_2160at 2570.607 kb on + strand, within Echvi_2160at 2570.662 kb on + strand, within Echvi_2160at 2570.662 kb on + strand, within Echvi_2160at 2570.662 kb on + strand, within Echvi_2160at 2570.662 kb on + strand, within Echvi_2160at 2570.762 kb on + strand, within Echvi_2160at 2570.762 kb on + strand, within Echvi_2160at 2570.778 kb on + strand, within Echvi_2160at 2570.937 kb on + strand, within Echvi_2160at 2570.937 kb on + strand, within Echvi_2160at 2570.937 kb on + strand, within Echvi_2160at 2570.939 kb on + strand, within Echvi_2160at 2570.939 kb on + strand, within Echvi_2160at 2570.940 kb on - strand, within Echvi_2160at 2570.940 kb on - strand, within Echvi_2160at 2570.956 kb on - strand, within Echvi_2160at 2571.053 kb on + strand, within Echvi_2160at 2571.053 kb on + strand, within Echvi_2160at 2571.109 kb on + strandat 2571.177 kb on - strandat 2571.198 kb on + strandat 2571.269 kb on + strandat 2571.269 kb on + strandat 2571.270 kb on - strandat 2571.273 kb on + strandat 2571.601 kb on + strandat 2571.651 kb on + strand, within Echvi_2161at 2571.653 kb on + strand, within Echvi_2161at 2571.653 kb on + strand, within Echvi_2161at 2571.653 kb on + strand, within Echvi_2161at 2571.653 kb on + strand, within Echvi_2161at 2571.653 kb on + strand, within Echvi_2161at 2571.654 kb on - strand, within Echvi_2161at 2571.654 kb on - strand, within Echvi_2161at 2571.654 kb on - strand, within Echvi_2161at 2571.654 kb on - strand, within Echvi_2161at 2571.657 kb on + strand, within Echvi_2161at 2571.657 kb on + strand, within Echvi_2161at 2571.657 kb on + strand, within Echvi_2161at 2571.658 kb on - strand, within Echvi_2161at 2571.658 kb on - strand, within Echvi_2161at 2571.669 kb on - strand, within Echvi_2161at 2571.681 kb on + strand, within Echvi_2161at 2571.687 kb on + strand, within Echvi_2161at 2571.687 kb on + strand, within Echvi_2161at 2571.702 kb on - strand, within Echvi_2161at 2571.721 kb on + strand, within Echvi_2161at 2571.728 kb on + strand, within Echvi_2161at 2571.801 kb on + strand, within Echvi_2161at 2571.801 kb on + strand, within Echvi_2161at 2571.802 kb on - strand, within Echvi_2161at 2571.867 kb on + strand, within Echvi_2161at 2571.966 kb on + strand, within Echvi_2161at 2571.966 kb on + strand, within Echvi_2161at 2572.001 kb on + strand, within Echvi_2161at 2572.026 kb on - strand, within Echvi_2161at 2572.033 kb on - strand, within Echvi_2161at 2572.092 kb on + strand, within Echvi_2161at 2572.131 kb on + strandat 2572.131 kb on + strandat 2572.131 kb on + strandat 2572.132 kb on - strandat 2572.132 kb on - strandat 2572.133 kb on + strandat 2572.133 kb on + strandat 2572.134 kb on - strandat 2572.194 kb on + strandat 2572.195 kb on - strandat 2572.216 kb on + strandat 2572.217 kb on - strandat 2572.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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2,569,044 - Echvi_2159 0.51 -0.5
2,569,206 - Echvi_2159 0.62 +0.8
2,569,269 + Echvi_2159 0.66 -1.1
2,569,276 + Echvi_2159 0.66 -0.7
2,569,276 + Echvi_2159 0.66 +0.9
2,569,277 - Echvi_2159 0.66 +0.1
2,569,277 - Echvi_2159 0.66 +0.8
2,569,277 - Echvi_2159 0.66 -0.4
2,569,279 + Echvi_2159 0.66 -0.1
2,569,280 - Echvi_2159 0.66 -0.2
2,569,466 + Echvi_2159 0.78 +0.3
2,569,518 + Echvi_2159 0.81 +0.4
2,569,526 - Echvi_2159 0.82 +0.3
2,569,536 + Echvi_2159 0.82 -0.2
2,569,705 - +1.3
2,569,720 + -0.1
2,569,721 - +1.5
2,569,721 - +1.1
2,569,788 + +1.5
2,569,789 - +0.2
2,569,791 + +0.7
2,569,792 - +0.2
2,569,846 - -1.0
2,569,903 + -0.6
2,569,944 + -0.5
2,570,000 + +2.0
2,570,037 + -0.4
2,570,043 + -0.1
2,570,052 + -0.6
2,570,057 - +0.7
2,570,063 + +0.9
2,570,114 - +1.3
2,570,145 + Echvi_2160 0.12 +0.4
2,570,145 + Echvi_2160 0.12 +0.4
2,570,146 - Echvi_2160 0.12 +1.0
2,570,146 - Echvi_2160 0.12 +0.5
2,570,189 + Echvi_2160 0.16 +0.8
2,570,189 + Echvi_2160 0.16 -0.7
2,570,190 - Echvi_2160 0.16 -1.1
2,570,194 - Echvi_2160 0.16 +0.2
2,570,224 - Echvi_2160 0.19 +0.5
2,570,280 + Echvi_2160 0.23 +0.0
2,570,308 - Echvi_2160 0.26 +0.2
2,570,316 + Echvi_2160 0.26 -2.1
2,570,342 - Echvi_2160 0.28 -1.7
2,570,388 + Echvi_2160 0.32 +0.2
2,570,389 - Echvi_2160 0.32 +1.0
2,570,422 + Echvi_2160 0.35 +0.3
2,570,423 - Echvi_2160 0.35 +0.5
2,570,423 - Echvi_2160 0.35 +0.4
2,570,423 - Echvi_2160 0.35 -0.0
2,570,423 - Echvi_2160 0.35 +0.9
2,570,431 - Echvi_2160 0.36 +0.4
2,570,539 - Echvi_2160 0.44 +0.4
2,570,539 - Echvi_2160 0.44 +2.0
2,570,575 + Echvi_2160 0.47 +0.0
2,570,578 + Echvi_2160 0.47 +0.7
2,570,578 + Echvi_2160 0.47 -0.4
2,570,579 - Echvi_2160 0.48 -0.2
2,570,579 - Echvi_2160 0.48 -1.5
2,570,579 - Echvi_2160 0.48 +0.2
2,570,607 + Echvi_2160 0.50 -0.8
2,570,662 + Echvi_2160 0.54 -0.6
2,570,662 + Echvi_2160 0.54 +0.4
2,570,662 + Echvi_2160 0.54 -0.2
2,570,662 + Echvi_2160 0.54 -0.3
2,570,762 + Echvi_2160 0.62 -0.9
2,570,762 + Echvi_2160 0.62 -0.6
2,570,778 + Echvi_2160 0.64 -0.4
2,570,937 + Echvi_2160 0.77 +1.0
2,570,937 + Echvi_2160 0.77 +0.3
2,570,937 + Echvi_2160 0.77 +0.1
2,570,939 + Echvi_2160 0.77 +0.0
2,570,939 + Echvi_2160 0.77 -0.4
2,570,940 - Echvi_2160 0.77 +0.3
2,570,940 - Echvi_2160 0.77 +0.2
2,570,956 - Echvi_2160 0.78 +0.0
2,571,053 + Echvi_2160 0.86 +0.4
2,571,053 + Echvi_2160 0.86 +0.5
2,571,109 + +1.4
2,571,177 - -0.0
2,571,198 + +0.7
2,571,269 + +0.0
2,571,269 + +0.6
2,571,270 - -1.0
2,571,273 + -0.2
2,571,601 + -0.8
2,571,651 + Echvi_2161 0.12 +0.2
2,571,653 + Echvi_2161 0.12 +0.2
2,571,653 + Echvi_2161 0.12 -0.2
2,571,653 + Echvi_2161 0.12 -1.4
2,571,653 + Echvi_2161 0.12 +0.8
2,571,653 + Echvi_2161 0.12 -0.3
2,571,654 - Echvi_2161 0.12 -0.3
2,571,654 - Echvi_2161 0.12 +0.1
2,571,654 - Echvi_2161 0.12 +2.0
2,571,654 - Echvi_2161 0.12 +1.3
2,571,657 + Echvi_2161 0.13 +0.0
2,571,657 + Echvi_2161 0.13 -0.6
2,571,657 + Echvi_2161 0.13 +0.6
2,571,658 - Echvi_2161 0.13 -0.8
2,571,658 - Echvi_2161 0.13 -0.2
2,571,669 - Echvi_2161 0.15 -0.9
2,571,681 + Echvi_2161 0.17 -0.6
2,571,687 + Echvi_2161 0.18 +0.3
2,571,687 + Echvi_2161 0.18 -1.2
2,571,702 - Echvi_2161 0.20 -2.2
2,571,721 + Echvi_2161 0.24 -0.2
2,571,728 + Echvi_2161 0.25 -0.2
2,571,801 + Echvi_2161 0.37 +0.5
2,571,801 + Echvi_2161 0.37 +0.8
2,571,802 - Echvi_2161 0.37 -0.6
2,571,867 + Echvi_2161 0.48 -0.3
2,571,966 + Echvi_2161 0.64 -1.5
2,571,966 + Echvi_2161 0.64 -0.8
2,572,001 + Echvi_2161 0.70 +1.8
2,572,026 - Echvi_2161 0.74 +0.6
2,572,033 - Echvi_2161 0.75 -1.0
2,572,092 + Echvi_2161 0.85 +1.3
2,572,131 + -0.2
2,572,131 + -0.3
2,572,131 + -2.0
2,572,132 - +2.4
2,572,132 - +0.0
2,572,133 + -0.9
2,572,133 + -1.5
2,572,134 - +0.1
2,572,194 + +0.7
2,572,195 - -0.2
2,572,216 + -0.5
2,572,217 - +0.0
2,572,217 - -0.3

Or see this region's nucleotide sequence