Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0504 and Echvi_0505 are separated by 4 nucleotides Echvi_0505 and Echvi_0506 overlap by 10 nucleotides Echvi_0506 and Echvi_0507 are separated by 263 nucleotides
Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401
_0504
Echvi_0505: Echvi_0505 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 564,406 to 564,996
_0505
Echvi_0506: Echvi_0506 - Predicted neuraminidase (sialidase), at 564,987 to 566,087
_0506
Echvi_0507: Echvi_0507 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 566,351 to 567,364
_0507
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 564.014 kb on + strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.047 kb on - strand, within Echvi_0504 at 564.085 kb on - strand at 564.086 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.355 kb on + strand at 564.355 kb on + strand at 564.356 kb on - strand at 564.356 kb on - strand at 564.386 kb on + strand at 564.399 kb on + strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.425 kb on + strand at 564.426 kb on - strand at 564.434 kb on + strand at 564.435 kb on - strand at 564.473 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.580 kb on - strand, within Echvi_0505 at 564.592 kb on - strand, within Echvi_0505 at 564.727 kb on + strand, within Echvi_0505 at 564.825 kb on + strand, within Echvi_0505 at 564.899 kb on - strand, within Echvi_0505 at 564.957 kb on + strand at 564.957 kb on + strand at 564.958 kb on - strand at 564.974 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on - strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.045 kb on + strand at 565.052 kb on + strand at 565.053 kb on - strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.218 kb on - strand, within Echvi_0506 at 565.218 kb on - strand, within Echvi_0506 at 565.219 kb on + strand, within Echvi_0506 at 565.220 kb on - strand, within Echvi_0506 at 565.227 kb on + strand, within Echvi_0506 at 565.279 kb on - strand, within Echvi_0506 at 565.310 kb on + strand, within Echvi_0506 at 565.311 kb on - strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.399 kb on - strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.421 kb on - strand, within Echvi_0506 at 565.421 kb on - strand, within Echvi_0506 at 565.576 kb on - strand, within Echvi_0506 at 565.576 kb on - strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.639 kb on + strand, within Echvi_0506 at 565.640 kb on - strand, within Echvi_0506 at 565.640 kb on - strand, within Echvi_0506 at 565.676 kb on + strand, within Echvi_0506 at 565.736 kb on - strand, within Echvi_0506 at 565.752 kb on + strand, within Echvi_0506 at 565.887 kb on + strand, within Echvi_0506 at 565.888 kb on - strand, within Echvi_0506 at 565.895 kb on + strand, within Echvi_0506 at 565.896 kb on - strand, within Echvi_0506 at 565.957 kb on - strand, within Echvi_0506 at 566.016 kb on + strand at 566.053 kb on - strand at 566.088 kb on - strand at 566.107 kb on + strand at 566.107 kb on + strand at 566.108 kb on - strand at 566.108 kb on - strand at 566.108 kb on - strand at 566.138 kb on + strand at 566.163 kb on + strand at 566.291 kb on + strand at 566.292 kb on - strand at 566.292 kb on - strand at 566.344 kb on + strand at 566.344 kb on + strand at 566.345 kb on - strand at 566.350 kb on - strand at 566.353 kb on - strand at 566.374 kb on + strand at 566.375 kb on - strand at 566.450 kb on - strand at 566.450 kb on - strand at 566.450 kb on - strand at 566.451 kb on + strand at 566.451 kb on + strand at 566.451 kb on + strand at 566.452 kb on - strand at 566.452 kb on - strand at 566.452 kb on - strand at 566.569 kb on + strand, within Echvi_0507 at 566.570 kb on - strand, within Echvi_0507 at 566.598 kb on - strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.607 kb on + strand, within Echvi_0507 at 566.608 kb on - strand, within Echvi_0507 at 566.746 kb on + strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 567.044 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 564,014 + Echvi_0504 0.88 +0.4 564,022 - Echvi_0504 0.88 +1.4 564,022 - Echvi_0504 0.88 -0.9 564,047 - Echvi_0504 0.89 +0.3 564,085 - -0.5 564,086 + -0.0 564,181 + -0.5 564,181 + +0.6 564,181 + -0.7 564,182 - +0.6 564,182 - +0.2 564,182 - -2.5 564,355 + +0.9 564,355 + -0.1 564,356 - +0.9 564,356 - +0.9 564,386 + -0.5 564,399 + +0.8 564,400 - +1.1 564,400 - +0.6 564,400 - +0.7 564,425 + +0.4 564,426 - -0.1 564,434 + -0.4 564,435 - +0.6 564,473 + Echvi_0505 0.11 +0.5 564,500 + Echvi_0505 0.16 +1.2 564,500 + Echvi_0505 0.16 -0.2 564,500 + Echvi_0505 0.16 -1.4 564,501 - Echvi_0505 0.16 +0.7 564,501 - Echvi_0505 0.16 -0.3 564,501 - Echvi_0505 0.16 +0.5 564,501 - Echvi_0505 0.16 -0.2 564,501 - Echvi_0505 0.16 +0.0 564,580 - Echvi_0505 0.29 -0.8 564,592 - Echvi_0505 0.31 -0.3 564,727 + Echvi_0505 0.54 +0.2 564,825 + Echvi_0505 0.71 +0.6 564,899 - Echvi_0505 0.83 +0.3 564,957 + -1.2 564,957 + +0.3 564,958 - -0.0 564,974 + +0.3 564,988 + -1.7 564,988 + +0.3 564,988 + -0.4 564,999 + +0.6 564,999 + +0.9 564,999 + -0.3 565,000 - +0.0 565,000 - +1.0 565,003 - +0.9 565,043 + +0.4 565,043 + +1.4 565,043 + -0.8 565,045 + -0.1 565,052 + +0.4 565,053 - -0.1 565,056 + +0.6 565,056 + +0.4 565,056 + +0.7 565,218 - Echvi_0506 0.21 -0.1 565,218 - Echvi_0506 0.21 -1.0 565,219 + Echvi_0506 0.21 -0.3 565,220 - Echvi_0506 0.21 -0.1 565,227 + Echvi_0506 0.22 +0.1 565,279 - Echvi_0506 0.27 +0.9 565,310 + Echvi_0506 0.29 -0.8 565,311 - Echvi_0506 0.29 +0.6 565,398 + Echvi_0506 0.37 -1.4 565,398 + Echvi_0506 0.37 -2.0 565,399 - Echvi_0506 0.37 -1.8 565,400 + Echvi_0506 0.38 -1.5 565,400 + Echvi_0506 0.38 +0.5 565,400 + Echvi_0506 0.38 +0.0 565,400 + Echvi_0506 0.38 -2.0 565,421 - Echvi_0506 0.39 -2.0 565,421 - Echvi_0506 0.39 -0.5 565,576 - Echvi_0506 0.53 -0.0 565,576 - Echvi_0506 0.53 +0.3 565,639 + Echvi_0506 0.59 -1.9 565,639 + Echvi_0506 0.59 -0.2 565,639 + Echvi_0506 0.59 -0.1 565,640 - Echvi_0506 0.59 -0.7 565,640 - Echvi_0506 0.59 -1.7 565,676 + Echvi_0506 0.63 +0.4 565,736 - Echvi_0506 0.68 -0.3 565,752 + Echvi_0506 0.69 -1.6 565,887 + Echvi_0506 0.82 -1.3 565,888 - Echvi_0506 0.82 +1.1 565,895 + Echvi_0506 0.82 +1.4 565,896 - Echvi_0506 0.83 -1.4 565,957 - Echvi_0506 0.88 -0.7 566,016 + -0.9 566,053 - -0.6 566,088 - +0.3 566,107 + -0.5 566,107 + -0.6 566,108 - -0.9 566,108 - +1.5 566,108 - -2.5 566,138 + -0.7 566,163 + +0.9 566,291 + +0.0 566,292 - -0.5 566,292 - -0.5 566,344 + +0.7 566,344 + -1.7 566,345 - +0.9 566,350 - -0.5 566,353 - -1.0 566,374 + +1.0 566,375 - -0.6 566,450 - +0.2 566,450 - +0.7 566,450 - -0.8 566,451 + -0.9 566,451 + -0.4 566,451 + +0.2 566,452 - -0.3 566,452 - +0.5 566,452 - -0.4 566,569 + Echvi_0507 0.21 +0.8 566,570 - Echvi_0507 0.22 +0.6 566,598 - Echvi_0507 0.24 +0.9 566,607 + Echvi_0507 0.25 +0.7 566,607 + Echvi_0507 0.25 -0.2 566,607 + Echvi_0507 0.25 +0.1 566,608 - Echvi_0507 0.25 +0.7 566,746 + Echvi_0507 0.39 -0.5 566,747 - Echvi_0507 0.39 -2.4 566,747 - Echvi_0507 0.39 -1.0 566,780 + Echvi_0507 0.42 +1.3 566,780 + Echvi_0507 0.42 -0.5 567,044 + Echvi_0507 0.68 -1.4 567,055 + Echvi_0507 0.69 +0.0 567,055 + Echvi_0507 0.69 +0.4
Or see this region's nucleotide sequence