Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20095

Experiment: m.b. Lomefloxacin 0.002 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20090 and CA264_20095 overlap by 28 nucleotidesCA264_20095 and CA264_20100 are separated by 111 nucleotides CA264_20090: CA264_20090 - hypothetical protein, at 4,632,099 to 4,633,001 _20090 CA264_20095: CA264_20095 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 4,632,974 to 4,633,816 _20095 CA264_20100: CA264_20100 - mannose-1-phosphate guanylyltransferase, at 4,633,928 to 4,635,004 _20100 Position (kb) 4632 4633 4634Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4631.986 kb on - strandat 4631.992 kb on - strandat 4632.068 kb on - strandat 4632.076 kb on + strandat 4632.077 kb on - strandat 4632.077 kb on - strandat 4632.077 kb on - strandat 4632.195 kb on - strand, within CA264_20090at 4632.195 kb on - strand, within CA264_20090at 4632.425 kb on + strand, within CA264_20090at 4632.464 kb on + strand, within CA264_20090at 4632.465 kb on - strand, within CA264_20090at 4632.488 kb on + strand, within CA264_20090at 4632.537 kb on + strand, within CA264_20090at 4632.547 kb on + strand, within CA264_20090at 4632.705 kb on + strand, within CA264_20090at 4632.706 kb on - strand, within CA264_20090at 4632.706 kb on - strand, within CA264_20090at 4632.706 kb on - strand, within CA264_20090at 4632.708 kb on + strand, within CA264_20090at 4632.708 kb on + strand, within CA264_20090at 4632.709 kb on - strand, within CA264_20090at 4632.709 kb on - strand, within CA264_20090at 4632.709 kb on - strand, within CA264_20090at 4632.781 kb on + strand, within CA264_20090at 4632.781 kb on + strand, within CA264_20090at 4632.781 kb on + strand, within CA264_20090at 4632.781 kb on + strand, within CA264_20090at 4632.782 kb on - strand, within CA264_20090at 4632.782 kb on - strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.783 kb on + strand, within CA264_20090at 4632.784 kb on - strand, within CA264_20090at 4632.792 kb on + strand, within CA264_20090at 4632.899 kb on + strand, within CA264_20090at 4633.156 kb on - strand, within CA264_20095at 4633.252 kb on + strand, within CA264_20095at 4633.264 kb on + strand, within CA264_20095at 4633.332 kb on + strand, within CA264_20095at 4633.333 kb on - strand, within CA264_20095at 4633.524 kb on - strand, within CA264_20095at 4633.590 kb on - strand, within CA264_20095at 4633.785 kb on - strandat 4633.815 kb on - strandat 4633.840 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
remove
4,631,986 - -0.1
4,631,992 - +0.1
4,632,068 - +0.5
4,632,076 + +0.0
4,632,077 - +0.7
4,632,077 - +2.9
4,632,077 - -1.2
4,632,195 - CA264_20090 0.11 -0.8
4,632,195 - CA264_20090 0.11 +0.2
4,632,425 + CA264_20090 0.36 -0.1
4,632,464 + CA264_20090 0.40 -0.1
4,632,465 - CA264_20090 0.41 -1.2
4,632,488 + CA264_20090 0.43 +1.1
4,632,537 + CA264_20090 0.49 -0.4
4,632,547 + CA264_20090 0.50 +0.5
4,632,705 + CA264_20090 0.67 +0.7
4,632,706 - CA264_20090 0.67 -1.2
4,632,706 - CA264_20090 0.67 +0.7
4,632,706 - CA264_20090 0.67 -0.2
4,632,708 + CA264_20090 0.67 +0.1
4,632,708 + CA264_20090 0.67 -1.9
4,632,709 - CA264_20090 0.68 +0.5
4,632,709 - CA264_20090 0.68 -0.6
4,632,709 - CA264_20090 0.68 -0.3
4,632,781 + CA264_20090 0.76 -1.2
4,632,781 + CA264_20090 0.76 +1.3
4,632,781 + CA264_20090 0.76 -0.7
4,632,781 + CA264_20090 0.76 +0.7
4,632,782 - CA264_20090 0.76 +0.1
4,632,782 - CA264_20090 0.76 +0.4
4,632,783 + CA264_20090 0.76 +1.1
4,632,783 + CA264_20090 0.76 -1.0
4,632,783 + CA264_20090 0.76 +0.3
4,632,783 + CA264_20090 0.76 -0.2
4,632,783 + CA264_20090 0.76 -0.1
4,632,783 + CA264_20090 0.76 +1.3
4,632,784 - CA264_20090 0.76 -0.1
4,632,792 + CA264_20090 0.77 -0.1
4,632,899 + CA264_20090 0.89 -0.4
4,633,156 - CA264_20095 0.22 +0.6
4,633,252 + CA264_20095 0.33 +1.6
4,633,264 + CA264_20095 0.34 +1.8
4,633,332 + CA264_20095 0.42 +1.8
4,633,333 - CA264_20095 0.43 -0.3
4,633,524 - CA264_20095 0.65 +1.2
4,633,590 - CA264_20095 0.73 +1.1
4,633,785 - -0.9
4,633,815 - +0.6
4,633,840 - -0.3

Or see this region's nucleotide sequence