Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19050 and CA264_19055 are separated by 38 nucleotides CA264_19055 and CA264_19060 are separated by 83 nucleotides
CA264_19050: CA264_19050 - capsular biosynthesis protein, at 4,427,840 to 4,428,592
_19050
CA264_19055: CA264_19055 - epimerase, at 4,428,631 to 4,429,605
_19055
CA264_19060: CA264_19060 - hypothetical protein, at 4,429,689 to 4,431,086
_19060
Position (kb)
4428
4429
4430 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4427.700 kb on - strand at 4427.703 kb on + strand at 4427.703 kb on + strand at 4427.749 kb on + strand at 4427.767 kb on + strand at 4427.833 kb on - strand at 4427.844 kb on + strand at 4427.844 kb on + strand at 4427.845 kb on - strand at 4427.845 kb on - strand at 4428.590 kb on + strand at 4428.616 kb on - strand at 4428.626 kb on + strand at 4428.627 kb on - strand at 4428.635 kb on + strand at 4428.636 kb on - strand at 4428.732 kb on - strand, within CA264_19055 at 4428.824 kb on - strand, within CA264_19055 at 4428.854 kb on - strand, within CA264_19055 at 4428.888 kb on - strand, within CA264_19055 at 4428.911 kb on + strand, within CA264_19055 at 4428.911 kb on + strand, within CA264_19055 at 4428.911 kb on + strand, within CA264_19055 at 4428.939 kb on + strand, within CA264_19055 at 4429.180 kb on + strand, within CA264_19055 at 4429.229 kb on + strand, within CA264_19055 at 4429.322 kb on - strand, within CA264_19055 at 4429.625 kb on + strand at 4429.640 kb on + strand at 4429.640 kb on + strand at 4429.641 kb on - strand at 4429.641 kb on - strand at 4429.641 kb on - strand at 4429.645 kb on - strand at 4429.645 kb on - strand at 4429.798 kb on - strand at 4429.799 kb on + strand at 4429.813 kb on - strand at 4429.815 kb on - strand at 4429.832 kb on + strand, within CA264_19060 at 4429.832 kb on + strand, within CA264_19060 at 4429.833 kb on - strand, within CA264_19060 at 4429.833 kb on - strand, within CA264_19060 at 4429.833 kb on - strand, within CA264_19060 at 4429.873 kb on - strand, within CA264_19060 at 4430.047 kb on + strand, within CA264_19060 at 4430.047 kb on + strand, within CA264_19060 at 4430.048 kb on - strand, within CA264_19060 at 4430.048 kb on - strand, within CA264_19060 at 4430.048 kb on - strand, within CA264_19060 at 4430.093 kb on + strand, within CA264_19060 at 4430.093 kb on + strand, within CA264_19060 at 4430.095 kb on + strand, within CA264_19060 at 4430.096 kb on - strand, within CA264_19060 at 4430.098 kb on - strand, within CA264_19060 at 4430.098 kb on - strand, within CA264_19060 at 4430.098 kb on - strand, within CA264_19060 at 4430.102 kb on + strand, within CA264_19060 at 4430.155 kb on - strand, within CA264_19060 at 4430.157 kb on + strand, within CA264_19060 at 4430.158 kb on - strand, within CA264_19060 at 4430.158 kb on - strand, within CA264_19060 at 4430.214 kb on + strand, within CA264_19060 at 4430.215 kb on - strand, within CA264_19060 at 4430.286 kb on + strand, within CA264_19060 at 4430.292 kb on + strand, within CA264_19060 at 4430.327 kb on + strand, within CA264_19060 at 4430.327 kb on + strand, within CA264_19060 at 4430.327 kb on + strand, within CA264_19060 at 4430.328 kb on - strand, within CA264_19060 at 4430.367 kb on + strand, within CA264_19060 at 4430.442 kb on + strand, within CA264_19060 at 4430.444 kb on + strand, within CA264_19060 at 4430.445 kb on - strand, within CA264_19060 at 4430.505 kb on + strand, within CA264_19060 at 4430.505 kb on + strand, within CA264_19060 at 4430.510 kb on + strand, within CA264_19060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 4,427,700 - -1.7 4,427,703 + +0.0 4,427,703 + -0.7 4,427,749 + -0.7 4,427,767 + +1.0 4,427,833 - -0.3 4,427,844 + -0.2 4,427,844 + -0.9 4,427,845 - -0.2 4,427,845 - -0.1 4,428,590 + +0.0 4,428,616 - -0.6 4,428,626 + -0.8 4,428,627 - -0.6 4,428,635 + -1.2 4,428,636 - -0.8 4,428,732 - CA264_19055 0.10 -0.6 4,428,824 - CA264_19055 0.20 -0.0 4,428,854 - CA264_19055 0.23 -0.6 4,428,888 - CA264_19055 0.26 +1.3 4,428,911 + CA264_19055 0.29 -0.8 4,428,911 + CA264_19055 0.29 +0.2 4,428,911 + CA264_19055 0.29 -1.2 4,428,939 + CA264_19055 0.32 +0.6 4,429,180 + CA264_19055 0.56 +0.4 4,429,229 + CA264_19055 0.61 -3.5 4,429,322 - CA264_19055 0.71 -0.6 4,429,625 + -0.1 4,429,640 + -1.0 4,429,640 + -0.6 4,429,641 - -0.6 4,429,641 - -0.9 4,429,641 - +0.2 4,429,645 - -0.3 4,429,645 - +0.1 4,429,798 - -1.6 4,429,799 + -1.1 4,429,813 - -2.1 4,429,815 - -1.2 4,429,832 + CA264_19060 0.10 -0.8 4,429,832 + CA264_19060 0.10 -1.6 4,429,833 - CA264_19060 0.10 -1.5 4,429,833 - CA264_19060 0.10 -2.0 4,429,833 - CA264_19060 0.10 -2.3 4,429,873 - CA264_19060 0.13 -1.2 4,430,047 + CA264_19060 0.26 -2.6 4,430,047 + CA264_19060 0.26 -1.2 4,430,048 - CA264_19060 0.26 -0.9 4,430,048 - CA264_19060 0.26 -1.4 4,430,048 - CA264_19060 0.26 -1.2 4,430,093 + CA264_19060 0.29 -2.3 4,430,093 + CA264_19060 0.29 -1.3 4,430,095 + CA264_19060 0.29 -1.4 4,430,096 - CA264_19060 0.29 -2.2 4,430,098 - CA264_19060 0.29 -0.4 4,430,098 - CA264_19060 0.29 -1.0 4,430,098 - CA264_19060 0.29 -1.8 4,430,102 + CA264_19060 0.30 -1.8 4,430,155 - CA264_19060 0.33 -0.9 4,430,157 + CA264_19060 0.33 -0.7 4,430,158 - CA264_19060 0.34 +2.6 4,430,158 - CA264_19060 0.34 -1.4 4,430,214 + CA264_19060 0.38 -0.6 4,430,215 - CA264_19060 0.38 -1.3 4,430,286 + CA264_19060 0.43 -1.4 4,430,292 + CA264_19060 0.43 +0.2 4,430,327 + CA264_19060 0.46 -0.2 4,430,327 + CA264_19060 0.46 -1.3 4,430,327 + CA264_19060 0.46 -1.7 4,430,328 - CA264_19060 0.46 +0.0 4,430,367 + CA264_19060 0.48 -1.7 4,430,442 + CA264_19060 0.54 +1.5 4,430,444 + CA264_19060 0.54 -0.7 4,430,445 - CA264_19060 0.54 -1.3 4,430,505 + CA264_19060 0.58 -1.1 4,430,505 + CA264_19060 0.58 -2.1 4,430,510 + CA264_19060 0.59 -0.7
Or see this region's nucleotide sequence