Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19050

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19045 and CA264_19050 are separated by 243 nucleotidesCA264_19050 and CA264_19055 are separated by 38 nucleotides CA264_19045: CA264_19045 - acyl-CoA dehydrogenase, at 4,426,457 to 4,427,596 _19045 CA264_19050: CA264_19050 - capsular biosynthesis protein, at 4,427,840 to 4,428,592 _19050 CA264_19055: CA264_19055 - epimerase, at 4,428,631 to 4,429,605 _19055 Position (kb) 4427 4428 4429Strain fitness (log2 ratio) -3 -2 -1 0 1at 4426.867 kb on + strand, within CA264_19045at 4427.042 kb on + strand, within CA264_19045at 4427.096 kb on + strand, within CA264_19045at 4427.155 kb on - strand, within CA264_19045at 4427.304 kb on - strand, within CA264_19045at 4427.339 kb on - strand, within CA264_19045at 4427.391 kb on + strand, within CA264_19045at 4427.700 kb on - strandat 4427.703 kb on + strandat 4427.703 kb on + strandat 4427.749 kb on + strandat 4427.767 kb on + strandat 4427.833 kb on - strandat 4427.844 kb on + strandat 4427.844 kb on + strandat 4427.845 kb on - strandat 4427.845 kb on - strandat 4428.590 kb on + strandat 4428.616 kb on - strandat 4428.626 kb on + strandat 4428.627 kb on - strandat 4428.635 kb on + strandat 4428.636 kb on - strandat 4428.732 kb on - strand, within CA264_19055at 4428.824 kb on - strand, within CA264_19055at 4428.854 kb on - strand, within CA264_19055at 4428.888 kb on - strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.939 kb on + strand, within CA264_19055at 4429.180 kb on + strand, within CA264_19055at 4429.229 kb on + strand, within CA264_19055at 4429.322 kb on - strand, within CA264_19055

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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4,426,867 + CA264_19045 0.36 -0.7
4,427,042 + CA264_19045 0.51 -0.3
4,427,096 + CA264_19045 0.56 -0.8
4,427,155 - CA264_19045 0.61 -1.0
4,427,304 - CA264_19045 0.74 +0.0
4,427,339 - CA264_19045 0.77 -1.5
4,427,391 + CA264_19045 0.82 +1.0
4,427,700 - -1.7
4,427,703 + +0.0
4,427,703 + -0.7
4,427,749 + -0.7
4,427,767 + +1.0
4,427,833 - -0.3
4,427,844 + -0.2
4,427,844 + -0.9
4,427,845 - -0.2
4,427,845 - -0.1
4,428,590 + +0.0
4,428,616 - -0.6
4,428,626 + -0.8
4,428,627 - -0.6
4,428,635 + -1.2
4,428,636 - -0.8
4,428,732 - CA264_19055 0.10 -0.6
4,428,824 - CA264_19055 0.20 -0.0
4,428,854 - CA264_19055 0.23 -0.6
4,428,888 - CA264_19055 0.26 +1.3
4,428,911 + CA264_19055 0.29 -0.8
4,428,911 + CA264_19055 0.29 +0.2
4,428,911 + CA264_19055 0.29 -1.2
4,428,939 + CA264_19055 0.32 +0.6
4,429,180 + CA264_19055 0.56 +0.4
4,429,229 + CA264_19055 0.61 -3.5
4,429,322 - CA264_19055 0.71 -0.6

Or see this region's nucleotide sequence