Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18180 and CA264_18185 are separated by 234 nucleotides CA264_18185 and CA264_18190 are separated by 95 nucleotides CA264_18190 and CA264_18195 are separated by 16 nucleotides
CA264_18180: CA264_18180 - peptidase S41, at 4,227,033 to 4,228,694
_18180
CA264_18185: CA264_18185 - homogentisate 1,2-dioxygenase, at 4,228,929 to 4,230,134
_18185
CA264_18190: CA264_18190 - hypothetical protein, at 4,230,230 to 4,230,757
_18190
CA264_18195: CA264_18195 - chaperonin, at 4,230,774 to 4,231,151
_18195
Position (kb)
4228
4229
4230
4231 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4228.024 kb on + strand, within CA264_18180 at 4228.025 kb on - strand, within CA264_18180 at 4228.116 kb on - strand, within CA264_18180 at 4228.207 kb on - strand, within CA264_18180 at 4228.248 kb on + strand, within CA264_18180 at 4228.249 kb on - strand, within CA264_18180 at 4228.251 kb on - strand, within CA264_18180 at 4228.293 kb on - strand, within CA264_18180 at 4228.354 kb on - strand, within CA264_18180 at 4228.356 kb on - strand, within CA264_18180 at 4228.377 kb on + strand, within CA264_18180 at 4228.392 kb on + strand, within CA264_18180 at 4228.439 kb on + strand, within CA264_18180 at 4228.457 kb on - strand, within CA264_18180 at 4228.513 kb on - strand, within CA264_18180 at 4228.688 kb on + strand at 4228.689 kb on - strand at 4228.689 kb on - strand at 4228.692 kb on + strand at 4228.693 kb on - strand at 4228.704 kb on - strand at 4228.704 kb on - strand at 4228.750 kb on + strand at 4228.750 kb on + strand at 4228.767 kb on - strand at 4228.770 kb on - strand at 4228.772 kb on + strand at 4228.785 kb on + strand at 4228.786 kb on - strand at 4228.915 kb on - strand at 4228.915 kb on - strand at 4228.921 kb on - strand at 4228.921 kb on - strand at 4228.926 kb on + strand at 4228.926 kb on + strand at 4228.927 kb on - strand at 4228.927 kb on - strand at 4228.938 kb on + strand at 4228.943 kb on + strand at 4228.973 kb on + strand at 4228.973 kb on + strand at 4228.974 kb on - strand at 4229.004 kb on - strand at 4229.059 kb on - strand, within CA264_18185 at 4229.059 kb on - strand, within CA264_18185 at 4229.171 kb on - strand, within CA264_18185 at 4229.230 kb on + strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.271 kb on + strand, within CA264_18185 at 4229.272 kb on - strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.275 kb on - strand, within CA264_18185 at 4229.278 kb on - strand, within CA264_18185 at 4229.373 kb on + strand, within CA264_18185 at 4229.625 kb on + strand, within CA264_18185 at 4229.625 kb on + strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.679 kb on + strand, within CA264_18185 at 4229.679 kb on + strand, within CA264_18185 at 4229.680 kb on - strand, within CA264_18185 at 4229.680 kb on - strand, within CA264_18185 at 4229.693 kb on - strand, within CA264_18185 at 4229.865 kb on + strand, within CA264_18185 at 4229.866 kb on - strand, within CA264_18185 at 4229.868 kb on + strand, within CA264_18185 at 4229.885 kb on + strand, within CA264_18185 at 4230.000 kb on + strand, within CA264_18185 at 4230.001 kb on - strand, within CA264_18185 at 4230.073 kb on - strand at 4230.123 kb on - strand at 4230.123 kb on - strand at 4230.152 kb on - strand at 4230.207 kb on + strand at 4230.208 kb on - strand at 4230.216 kb on + strand at 4230.218 kb on + strand at 4230.270 kb on + strand at 4230.361 kb on - strand, within CA264_18190 at 4230.523 kb on + strand, within CA264_18190 at 4230.524 kb on - strand, within CA264_18190 at 4230.532 kb on + strand, within CA264_18190 at 4230.533 kb on + strand, within CA264_18190 at 4230.534 kb on - strand, within CA264_18190 at 4230.595 kb on + strand, within CA264_18190 at 4230.598 kb on + strand, within CA264_18190 at 4230.641 kb on + strand, within CA264_18190 at 4230.642 kb on - strand, within CA264_18190 at 4230.659 kb on + strand, within CA264_18190 at 4230.659 kb on + strand, within CA264_18190 at 4230.660 kb on - strand, within CA264_18190 at 4230.709 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.765 kb on - strand at 4230.765 kb on - strand at 4230.765 kb on - strand at 4230.769 kb on + strand at 4230.921 kb on + strand, within CA264_18195 at 4230.922 kb on - strand, within CA264_18195 at 4231.011 kb on + strand, within CA264_18195 at 4231.012 kb on - strand, within CA264_18195 at 4231.081 kb on - strand, within CA264_18195 at 4231.096 kb on - strand, within CA264_18195
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 4,228,024 + CA264_18180 0.60 +0.0 4,228,025 - CA264_18180 0.60 -1.4 4,228,116 - CA264_18180 0.65 -0.3 4,228,207 - CA264_18180 0.71 -0.3 4,228,248 + CA264_18180 0.73 -0.8 4,228,249 - CA264_18180 0.73 -0.4 4,228,251 - CA264_18180 0.73 +0.2 4,228,293 - CA264_18180 0.76 +0.3 4,228,354 - CA264_18180 0.79 -0.1 4,228,356 - CA264_18180 0.80 -0.8 4,228,377 + CA264_18180 0.81 -0.2 4,228,392 + CA264_18180 0.82 -0.3 4,228,439 + CA264_18180 0.85 +0.1 4,228,457 - CA264_18180 0.86 -0.1 4,228,513 - CA264_18180 0.89 -1.0 4,228,688 + -0.8 4,228,689 - -1.7 4,228,689 - +1.1 4,228,692 + +0.3 4,228,693 - +0.0 4,228,704 - +0.2 4,228,704 - -0.0 4,228,750 + -1.9 4,228,750 + -0.4 4,228,767 - -0.7 4,228,770 - +0.0 4,228,772 + -0.2 4,228,785 + +1.1 4,228,786 - +0.2 4,228,915 - +0.0 4,228,915 - -0.2 4,228,921 - +0.1 4,228,921 - -0.4 4,228,926 + +0.4 4,228,926 + -0.5 4,228,927 - +0.5 4,228,927 - -0.4 4,228,938 + +0.3 4,228,943 + +0.1 4,228,973 + +0.1 4,228,973 + -0.0 4,228,974 - -0.2 4,229,004 - +0.2 4,229,059 - CA264_18185 0.11 +0.9 4,229,059 - CA264_18185 0.11 -0.2 4,229,171 - CA264_18185 0.20 -0.5 4,229,230 + CA264_18185 0.25 -0.8 4,229,231 - CA264_18185 0.25 +0.1 4,229,231 - CA264_18185 0.25 -0.7 4,229,231 - CA264_18185 0.25 -0.2 4,229,271 + CA264_18185 0.28 -0.3 4,229,272 - CA264_18185 0.28 -0.1 4,229,274 + CA264_18185 0.29 +2.2 4,229,274 + CA264_18185 0.29 +0.4 4,229,274 + CA264_18185 0.29 -0.1 4,229,275 - CA264_18185 0.29 +0.4 4,229,278 - CA264_18185 0.29 -0.0 4,229,373 + CA264_18185 0.37 -0.2 4,229,625 + CA264_18185 0.58 +0.0 4,229,625 + CA264_18185 0.58 +0.1 4,229,626 - CA264_18185 0.58 -1.7 4,229,626 - CA264_18185 0.58 -0.7 4,229,626 - CA264_18185 0.58 -1.1 4,229,679 + CA264_18185 0.62 +0.2 4,229,679 + CA264_18185 0.62 -0.6 4,229,680 - CA264_18185 0.62 -0.6 4,229,680 - CA264_18185 0.62 -0.7 4,229,693 - CA264_18185 0.63 +0.5 4,229,865 + CA264_18185 0.78 -0.4 4,229,866 - CA264_18185 0.78 +0.1 4,229,868 + CA264_18185 0.78 -0.0 4,229,885 + CA264_18185 0.79 +3.2 4,230,000 + CA264_18185 0.89 +0.5 4,230,001 - CA264_18185 0.89 -0.0 4,230,073 - -0.4 4,230,123 - +0.1 4,230,123 - -0.2 4,230,152 - +2.1 4,230,207 + +1.3 4,230,208 - -0.6 4,230,216 + +0.5 4,230,218 + -0.5 4,230,270 + -0.3 4,230,361 - CA264_18190 0.25 -0.7 4,230,523 + CA264_18190 0.55 -0.2 4,230,524 - CA264_18190 0.56 -0.9 4,230,532 + CA264_18190 0.57 +1.1 4,230,533 + CA264_18190 0.57 +0.2 4,230,534 - CA264_18190 0.58 -0.5 4,230,595 + CA264_18190 0.69 -0.3 4,230,598 + CA264_18190 0.70 -0.7 4,230,641 + CA264_18190 0.78 +1.1 4,230,642 - CA264_18190 0.78 +0.3 4,230,659 + CA264_18190 0.81 +0.2 4,230,659 + CA264_18190 0.81 -0.5 4,230,660 - CA264_18190 0.81 -0.1 4,230,709 + +0.2 4,230,764 + -0.1 4,230,764 + -1.7 4,230,764 + -0.2 4,230,764 + +0.2 4,230,764 + -0.2 4,230,765 - -0.0 4,230,765 - +0.2 4,230,765 - -0.2 4,230,769 + -0.5 4,230,921 + CA264_18195 0.39 -2.3 4,230,922 - CA264_18195 0.39 +0.6 4,231,011 + CA264_18195 0.63 -0.7 4,231,012 - CA264_18195 0.63 -0.0 4,231,081 - CA264_18195 0.81 -0.8 4,231,096 - CA264_18195 0.85 -0.5
Or see this region's nucleotide sequence