Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16835

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16830 and CA264_16835 are separated by 40 nucleotidesCA264_16835 and CA264_16840 are separated by 118 nucleotidesCA264_16840 and CA264_16845 are separated by 140 nucleotides CA264_16830: CA264_16830 - (2Fe-2S)-binding protein, at 3,927,696 to 3,929,228 _16830 CA264_16835: CA264_16835 - hypothetical protein, at 3,929,269 to 3,929,685 _16835 CA264_16840: CA264_16840 - hypothetical protein, at 3,929,804 to 3,930,433 _16840 CA264_16845: CA264_16845 - T9SS C-terminal target domain-containing protein, at 3,930,574 to 3,932,214 _16845 Position (kb) 3929 3930Strain fitness (log2 ratio) -1 0 1at 3928.325 kb on - strand, within CA264_16830at 3928.371 kb on - strand, within CA264_16830at 3928.500 kb on + strand, within CA264_16830at 3928.602 kb on - strand, within CA264_16830at 3928.641 kb on + strand, within CA264_16830at 3928.642 kb on - strand, within CA264_16830at 3928.642 kb on - strand, within CA264_16830at 3928.664 kb on - strand, within CA264_16830at 3928.699 kb on - strand, within CA264_16830at 3928.722 kb on + strand, within CA264_16830at 3928.722 kb on + strand, within CA264_16830at 3928.723 kb on - strand, within CA264_16830at 3928.755 kb on + strand, within CA264_16830at 3928.755 kb on + strand, within CA264_16830at 3928.755 kb on + strand, within CA264_16830at 3928.756 kb on - strand, within CA264_16830at 3928.829 kb on - strand, within CA264_16830at 3928.829 kb on - strand, within CA264_16830at 3928.829 kb on - strand, within CA264_16830at 3928.947 kb on + strand, within CA264_16830at 3928.948 kb on - strand, within CA264_16830at 3928.948 kb on - strand, within CA264_16830at 3928.956 kb on + strand, within CA264_16830at 3929.108 kb on + strandat 3929.195 kb on + strandat 3929.195 kb on + strandat 3929.261 kb on + strandat 3929.261 kb on + strandat 3929.261 kb on + strandat 3929.264 kb on - strandat 3929.270 kb on + strandat 3929.642 kb on + strand, within CA264_16835at 3929.642 kb on + strand, within CA264_16835at 3929.642 kb on + strand, within CA264_16835at 3929.643 kb on - strand, within CA264_16835at 3929.645 kb on + strandat 3929.646 kb on - strandat 3929.648 kb on - strandat 3929.685 kb on + strandat 3929.686 kb on - strandat 3929.691 kb on + strandat 3929.692 kb on - strandat 3929.701 kb on + strandat 3929.701 kb on + strandat 3929.702 kb on - strandat 3929.702 kb on - strandat 3929.704 kb on - strandat 3929.705 kb on + strandat 3929.705 kb on + strandat 3929.711 kb on + strandat 3929.711 kb on + strandat 3929.712 kb on - strandat 3929.713 kb on + strandat 3929.713 kb on + strandat 3929.713 kb on + strandat 3929.714 kb on - strandat 3929.790 kb on + strandat 3929.801 kb on + strandat 3929.802 kb on - strandat 3929.805 kb on + strandat 3929.805 kb on + strandat 3929.806 kb on - strandat 3929.806 kb on - strandat 3929.826 kb on - strandat 3929.991 kb on + strand, within CA264_16840at 3929.992 kb on - strand, within CA264_16840at 3930.017 kb on - strand, within CA264_16840at 3930.151 kb on - strand, within CA264_16840at 3930.151 kb on - strand, within CA264_16840at 3930.160 kb on - strand, within CA264_16840at 3930.160 kb on - strand, within CA264_16840at 3930.241 kb on + strand, within CA264_16840at 3930.294 kb on + strand, within CA264_16840at 3930.299 kb on - strand, within CA264_16840at 3930.347 kb on + strand, within CA264_16840at 3930.348 kb on - strand, within CA264_16840at 3930.399 kb on - strandat 3930.410 kb on + strandat 3930.411 kb on - strandat 3930.448 kb on - strandat 3930.450 kb on + strandat 3930.451 kb on - strandat 3930.455 kb on - strandat 3930.455 kb on - strandat 3930.455 kb on - strandat 3930.502 kb on - strandat 3930.571 kb on + strandat 3930.572 kb on - strandat 3930.576 kb on - strandat 3930.632 kb on + strandat 3930.633 kb on - strandat 3930.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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3,928,325 - CA264_16830 0.41 +0.2
3,928,371 - CA264_16830 0.44 +0.9
3,928,500 + CA264_16830 0.52 -0.9
3,928,602 - CA264_16830 0.59 +0.2
3,928,641 + CA264_16830 0.62 +0.1
3,928,642 - CA264_16830 0.62 +0.2
3,928,642 - CA264_16830 0.62 -0.2
3,928,664 - CA264_16830 0.63 +0.5
3,928,699 - CA264_16830 0.65 +0.2
3,928,722 + CA264_16830 0.67 -0.1
3,928,722 + CA264_16830 0.67 -0.8
3,928,723 - CA264_16830 0.67 +0.4
3,928,755 + CA264_16830 0.69 -0.1
3,928,755 + CA264_16830 0.69 -0.1
3,928,755 + CA264_16830 0.69 +1.0
3,928,756 - CA264_16830 0.69 +0.0
3,928,829 - CA264_16830 0.74 +0.3
3,928,829 - CA264_16830 0.74 +0.3
3,928,829 - CA264_16830 0.74 +0.4
3,928,947 + CA264_16830 0.82 +0.6
3,928,948 - CA264_16830 0.82 +0.3
3,928,948 - CA264_16830 0.82 -0.3
3,928,956 + CA264_16830 0.82 -0.4
3,929,108 + -1.2
3,929,195 + +1.3
3,929,195 + +0.2
3,929,261 + -0.3
3,929,261 + -0.2
3,929,261 + -0.8
3,929,264 - -1.0
3,929,270 + -0.5
3,929,642 + CA264_16835 0.89 +0.5
3,929,642 + CA264_16835 0.89 -1.5
3,929,642 + CA264_16835 0.89 -0.3
3,929,643 - CA264_16835 0.90 -0.3
3,929,645 + -0.1
3,929,646 - -0.3
3,929,648 - -0.8
3,929,685 + +0.1
3,929,686 - +1.1
3,929,691 + +0.3
3,929,692 - +0.0
3,929,701 + -0.5
3,929,701 + -0.1
3,929,702 - -0.3
3,929,702 - -0.0
3,929,704 - +0.3
3,929,705 + -0.6
3,929,705 + -0.9
3,929,711 + -0.2
3,929,711 + -0.3
3,929,712 - +0.2
3,929,713 + +0.7
3,929,713 + +0.1
3,929,713 + +0.2
3,929,714 - -0.6
3,929,790 + +0.2
3,929,801 + -0.6
3,929,802 - -0.9
3,929,805 + -1.1
3,929,805 + -0.1
3,929,806 - -0.6
3,929,806 - +0.4
3,929,826 - -0.2
3,929,991 + CA264_16840 0.30 -1.2
3,929,992 - CA264_16840 0.30 +1.3
3,930,017 - CA264_16840 0.34 -0.3
3,930,151 - CA264_16840 0.55 -0.0
3,930,151 - CA264_16840 0.55 +0.3
3,930,160 - CA264_16840 0.57 +0.5
3,930,160 - CA264_16840 0.57 +0.4
3,930,241 + CA264_16840 0.69 +0.5
3,930,294 + CA264_16840 0.78 +0.3
3,930,299 - CA264_16840 0.79 -0.1
3,930,347 + CA264_16840 0.86 -1.3
3,930,348 - CA264_16840 0.86 -0.7
3,930,399 - +0.4
3,930,410 + -0.5
3,930,411 - -0.0
3,930,448 - +0.4
3,930,450 + -0.0
3,930,451 - -0.4
3,930,455 - +1.1
3,930,455 - -0.4
3,930,455 - +1.5
3,930,502 - +0.1
3,930,571 + +0.1
3,930,572 - -0.3
3,930,576 - -0.1
3,930,632 + +1.0
3,930,633 - -0.3
3,930,637 - -0.6

Or see this region's nucleotide sequence