Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15885 and CA264_15890 are separated by 211 nucleotides CA264_15890 and CA264_15895 are separated by 204 nucleotides CA264_15895 and CA264_15900 are separated by 105 nucleotides CA264_15900 and CA264_15905 are separated by 118 nucleotides
CA264_15885: CA264_15885 - TetR family transcriptional regulator, at 3,708,132 to 3,708,665
_15885
CA264_15890: CA264_15890 - hypothetical protein, at 3,708,877 to 3,709,173
_15890
CA264_15895: CA264_15895 - hypothetical protein, at 3,709,378 to 3,710,541
_15895
CA264_15900: CA264_15900 - SAM-dependent methyltransferase, at 3,710,647 to 3,711,330
_15900
CA264_15905: CA264_15905 - esterase, at 3,711,449 to 3,711,877
_15905
Position (kb)
3709
3710
3711 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3708.654 kb on + strand at 3708.655 kb on - strand at 3708.664 kb on - strand at 3708.719 kb on + strand at 3708.720 kb on - strand at 3708.745 kb on + strand at 3708.767 kb on - strand at 3708.796 kb on + strand at 3708.799 kb on - strand at 3708.833 kb on + strand at 3708.834 kb on - strand at 3708.842 kb on + strand at 3708.867 kb on - strand at 3708.872 kb on + strand at 3708.873 kb on - strand at 3708.874 kb on + strand at 3708.874 kb on + strand at 3708.875 kb on - strand at 3708.968 kb on - strand, within CA264_15890 at 3708.968 kb on - strand, within CA264_15890 at 3708.968 kb on - strand, within CA264_15890 at 3708.968 kb on - strand, within CA264_15890 at 3709.005 kb on + strand, within CA264_15890 at 3709.006 kb on - strand, within CA264_15890 at 3709.020 kb on - strand, within CA264_15890 at 3709.106 kb on + strand, within CA264_15890 at 3709.106 kb on + strand, within CA264_15890 at 3709.127 kb on + strand, within CA264_15890 at 3709.128 kb on - strand, within CA264_15890 at 3709.132 kb on - strand, within CA264_15890 at 3709.179 kb on - strand at 3709.533 kb on + strand, within CA264_15895 at 3709.534 kb on - strand, within CA264_15895 at 3709.653 kb on + strand, within CA264_15895 at 3709.702 kb on + strand, within CA264_15895 at 3709.834 kb on - strand, within CA264_15895 at 3709.906 kb on + strand, within CA264_15895 at 3709.907 kb on - strand, within CA264_15895 at 3709.907 kb on - strand, within CA264_15895 at 3709.907 kb on - strand, within CA264_15895 at 3709.917 kb on + strand, within CA264_15895 at 3709.917 kb on + strand, within CA264_15895 at 3709.918 kb on - strand, within CA264_15895 at 3709.951 kb on - strand, within CA264_15895 at 3709.982 kb on + strand, within CA264_15895 at 3709.997 kb on + strand, within CA264_15895 at 3710.001 kb on + strand, within CA264_15895 at 3710.028 kb on - strand, within CA264_15895 at 3710.138 kb on + strand, within CA264_15895 at 3710.150 kb on + strand, within CA264_15895 at 3710.176 kb on - strand, within CA264_15895 at 3710.176 kb on - strand, within CA264_15895 at 3710.176 kb on - strand, within CA264_15895 at 3710.176 kb on - strand, within CA264_15895 at 3710.179 kb on + strand, within CA264_15895 at 3710.179 kb on + strand, within CA264_15895 at 3710.179 kb on + strand, within CA264_15895 at 3710.180 kb on - strand, within CA264_15895 at 3710.180 kb on - strand, within CA264_15895 at 3710.243 kb on + strand, within CA264_15895 at 3710.328 kb on - strand, within CA264_15895 at 3710.328 kb on - strand, within CA264_15895 at 3710.339 kb on + strand, within CA264_15895 at 3710.340 kb on - strand, within CA264_15895 at 3710.340 kb on - strand, within CA264_15895 at 3710.378 kb on - strand, within CA264_15895 at 3710.378 kb on - strand, within CA264_15895 at 3710.448 kb on + strand at 3710.449 kb on - strand at 3710.452 kb on + strand at 3710.453 kb on - strand at 3710.473 kb on - strand at 3710.586 kb on + strand at 3710.587 kb on - strand at 3710.589 kb on + strand at 3710.589 kb on + strand at 3710.589 kb on + strand at 3710.590 kb on - strand at 3710.590 kb on - strand at 3710.590 kb on - strand at 3710.590 kb on - strand at 3710.592 kb on - strand at 3710.592 kb on - strand at 3710.594 kb on - strand at 3710.594 kb on - strand at 3710.594 kb on - strand at 3710.602 kb on - strand at 3710.605 kb on + strand at 3710.605 kb on + strand at 3710.606 kb on - strand at 3710.606 kb on - strand at 3710.607 kb on + strand at 3710.608 kb on - strand at 3710.616 kb on - strand at 3710.616 kb on - strand at 3710.768 kb on + strand, within CA264_15900 at 3710.768 kb on + strand, within CA264_15900 at 3710.769 kb on - strand, within CA264_15900 at 3710.769 kb on - strand, within CA264_15900 at 3710.769 kb on - strand, within CA264_15900 at 3710.804 kb on + strand, within CA264_15900 at 3710.805 kb on - strand, within CA264_15900 at 3710.870 kb on + strand, within CA264_15900 at 3710.882 kb on + strand, within CA264_15900 at 3710.882 kb on + strand, within CA264_15900 at 3710.885 kb on + strand, within CA264_15900 at 3710.923 kb on + strand, within CA264_15900 at 3710.923 kb on + strand, within CA264_15900 at 3710.924 kb on - strand, within CA264_15900 at 3710.924 kb on - strand, within CA264_15900 at 3710.949 kb on + strand, within CA264_15900 at 3710.990 kb on + strand, within CA264_15900 at 3710.991 kb on - strand, within CA264_15900 at 3711.033 kb on - strand, within CA264_15900 at 3711.082 kb on - strand, within CA264_15900 at 3711.086 kb on + strand, within CA264_15900 at 3711.086 kb on + strand, within CA264_15900 at 3711.087 kb on - strand, within CA264_15900 at 3711.127 kb on - strand, within CA264_15900 at 3711.130 kb on + strand, within CA264_15900 at 3711.285 kb on - strand at 3711.285 kb on - strand at 3711.285 kb on - strand at 3711.317 kb on - strand at 3711.382 kb on + strand at 3711.382 kb on + strand at 3711.384 kb on + strand at 3711.384 kb on + strand at 3711.384 kb on + strand at 3711.386 kb on + strand at 3711.387 kb on - strand at 3711.387 kb on - strand at 3711.393 kb on + strand at 3711.393 kb on + strand at 3711.409 kb on - strand at 3711.460 kb on - strand at 3711.460 kb on - strand at 3711.460 kb on - strand at 3711.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 3,708,654 + -0.5 3,708,655 - -0.1 3,708,664 - -0.7 3,708,719 + -0.5 3,708,720 - +0.4 3,708,745 + -0.6 3,708,767 - -0.9 3,708,796 + -0.2 3,708,799 - +0.2 3,708,833 + -0.4 3,708,834 - +0.3 3,708,842 + -0.4 3,708,867 - +0.0 3,708,872 + -0.4 3,708,873 - -0.5 3,708,874 + -0.2 3,708,874 + +1.6 3,708,875 - +0.2 3,708,968 - CA264_15890 0.31 +0.6 3,708,968 - CA264_15890 0.31 -0.1 3,708,968 - CA264_15890 0.31 +0.3 3,708,968 - CA264_15890 0.31 -0.6 3,709,005 + CA264_15890 0.43 +0.2 3,709,006 - CA264_15890 0.43 +1.2 3,709,020 - CA264_15890 0.48 -0.3 3,709,106 + CA264_15890 0.77 +0.0 3,709,106 + CA264_15890 0.77 -0.2 3,709,127 + CA264_15890 0.84 -0.4 3,709,128 - CA264_15890 0.85 -0.1 3,709,132 - CA264_15890 0.86 -0.4 3,709,179 - -0.9 3,709,533 + CA264_15895 0.13 +0.2 3,709,534 - CA264_15895 0.13 -0.9 3,709,653 + CA264_15895 0.24 +0.0 3,709,702 + CA264_15895 0.28 +0.0 3,709,834 - CA264_15895 0.39 -0.0 3,709,906 + CA264_15895 0.45 -1.2 3,709,907 - CA264_15895 0.45 -0.8 3,709,907 - CA264_15895 0.45 +0.1 3,709,907 - CA264_15895 0.45 -0.4 3,709,917 + CA264_15895 0.46 -0.2 3,709,917 + CA264_15895 0.46 -0.4 3,709,918 - CA264_15895 0.46 -0.4 3,709,951 - CA264_15895 0.49 -0.1 3,709,982 + CA264_15895 0.52 +0.3 3,709,997 + CA264_15895 0.53 -0.5 3,710,001 + CA264_15895 0.54 +0.2 3,710,028 - CA264_15895 0.56 +0.0 3,710,138 + CA264_15895 0.65 +0.1 3,710,150 + CA264_15895 0.66 -0.3 3,710,176 - CA264_15895 0.69 +0.3 3,710,176 - CA264_15895 0.69 -0.2 3,710,176 - CA264_15895 0.69 +0.1 3,710,176 - CA264_15895 0.69 +0.2 3,710,179 + CA264_15895 0.69 -0.1 3,710,179 + CA264_15895 0.69 -0.7 3,710,179 + CA264_15895 0.69 +0.6 3,710,180 - CA264_15895 0.69 +0.8 3,710,180 - CA264_15895 0.69 -1.6 3,710,243 + CA264_15895 0.74 -0.1 3,710,328 - CA264_15895 0.82 -0.9 3,710,328 - CA264_15895 0.82 -0.1 3,710,339 + CA264_15895 0.83 +0.3 3,710,340 - CA264_15895 0.83 +0.1 3,710,340 - CA264_15895 0.83 +0.3 3,710,378 - CA264_15895 0.86 -0.2 3,710,378 - CA264_15895 0.86 +0.5 3,710,448 + -0.1 3,710,449 - +0.6 3,710,452 + +0.0 3,710,453 - +1.4 3,710,473 - -0.6 3,710,586 + +0.3 3,710,587 - +0.3 3,710,589 + -0.0 3,710,589 + +0.2 3,710,589 + +0.0 3,710,590 - +0.5 3,710,590 - -0.1 3,710,590 - +1.0 3,710,590 - -0.2 3,710,592 - -0.9 3,710,592 - -0.4 3,710,594 - +0.1 3,710,594 - -0.0 3,710,594 - -0.2 3,710,602 - -0.5 3,710,605 + +0.1 3,710,605 + -0.0 3,710,606 - +0.7 3,710,606 - +1.0 3,710,607 + +0.2 3,710,608 - -1.1 3,710,616 - -0.9 3,710,616 - +0.2 3,710,768 + CA264_15900 0.18 +0.0 3,710,768 + CA264_15900 0.18 +1.8 3,710,769 - CA264_15900 0.18 +0.0 3,710,769 - CA264_15900 0.18 +1.6 3,710,769 - CA264_15900 0.18 +0.3 3,710,804 + CA264_15900 0.23 +1.2 3,710,805 - CA264_15900 0.23 -0.2 3,710,870 + CA264_15900 0.33 -0.9 3,710,882 + CA264_15900 0.34 +0.2 3,710,882 + CA264_15900 0.34 +1.3 3,710,885 + CA264_15900 0.35 +0.6 3,710,923 + CA264_15900 0.40 -0.3 3,710,923 + CA264_15900 0.40 +0.6 3,710,924 - CA264_15900 0.40 -2.3 3,710,924 - CA264_15900 0.40 +0.2 3,710,949 + CA264_15900 0.44 -0.4 3,710,990 + CA264_15900 0.50 -0.7 3,710,991 - CA264_15900 0.50 -1.1 3,711,033 - CA264_15900 0.56 -0.2 3,711,082 - CA264_15900 0.64 -0.5 3,711,086 + CA264_15900 0.64 -0.5 3,711,086 + CA264_15900 0.64 +1.3 3,711,087 - CA264_15900 0.64 -0.0 3,711,127 - CA264_15900 0.70 +1.2 3,711,130 + CA264_15900 0.71 -1.0 3,711,285 - +0.3 3,711,285 - +0.3 3,711,285 - +0.2 3,711,317 - +0.3 3,711,382 + -1.1 3,711,382 + -0.4 3,711,384 + +0.5 3,711,384 + +0.1 3,711,384 + +0.1 3,711,386 + -1.2 3,711,387 - -0.4 3,711,387 - -1.2 3,711,393 + -0.2 3,711,393 + -0.2 3,711,409 - -0.8 3,711,460 - -0.5 3,711,460 - -0.4 3,711,460 - +0.5 3,711,465 + +1.1
Or see this region's nucleotide sequence