Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15835

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15830 and CA264_15835 are separated by 25 nucleotidesCA264_15835 and CA264_15840 are separated by 162 nucleotides CA264_15830: CA264_15830 - hypothetical protein, at 3,694,447 to 3,697,494 _15830 CA264_15835: CA264_15835 - response regulator, at 3,697,520 to 3,697,927 _15835 CA264_15840: CA264_15840 - hypothetical protein, at 3,698,090 to 3,698,932 _15840 Position (kb) 3697 3698Strain fitness (log2 ratio) -2 -1 0 1 2at 3696.625 kb on + strand, within CA264_15830at 3696.628 kb on + strand, within CA264_15830at 3696.628 kb on + strand, within CA264_15830at 3696.629 kb on - strand, within CA264_15830at 3696.629 kb on - strand, within CA264_15830at 3696.629 kb on - strand, within CA264_15830at 3696.635 kb on + strand, within CA264_15830at 3696.636 kb on - strand, within CA264_15830at 3696.670 kb on + strand, within CA264_15830at 3696.683 kb on + strand, within CA264_15830at 3696.683 kb on + strand, within CA264_15830at 3696.684 kb on - strand, within CA264_15830at 3696.763 kb on - strand, within CA264_15830at 3696.839 kb on - strand, within CA264_15830at 3696.988 kb on + strand, within CA264_15830at 3697.179 kb on - strand, within CA264_15830at 3697.179 kb on - strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.267 kb on + strandat 3697.267 kb on + strandat 3697.304 kb on + strandat 3697.304 kb on + strandat 3697.388 kb on - strandat 3697.466 kb on - strandat 3697.471 kb on + strandat 3697.499 kb on - strandat 3697.507 kb on - strandat 3697.564 kb on + strand, within CA264_15835at 3697.572 kb on - strand, within CA264_15835at 3697.617 kb on + strand, within CA264_15835at 3697.617 kb on + strand, within CA264_15835at 3697.653 kb on - strand, within CA264_15835at 3697.662 kb on - strand, within CA264_15835at 3697.715 kb on - strand, within CA264_15835at 3697.757 kb on + strand, within CA264_15835at 3697.807 kb on + strand, within CA264_15835at 3697.808 kb on - strand, within CA264_15835at 3697.808 kb on - strand, within CA264_15835at 3697.871 kb on + strand, within CA264_15835at 3697.872 kb on - strand, within CA264_15835at 3697.872 kb on - strand, within CA264_15835at 3697.908 kb on + strandat 3697.909 kb on - strandat 3697.919 kb on + strandat 3697.920 kb on - strandat 3697.920 kb on - strandat 3697.920 kb on - strandat 3697.925 kb on + strandat 3697.925 kb on + strandat 3697.926 kb on - strandat 3697.926 kb on - strandat 3698.007 kb on + strandat 3698.010 kb on - strandat 3698.031 kb on - strandat 3698.031 kb on - strandat 3698.058 kb on + strandat 3698.062 kb on + strandat 3698.062 kb on + strandat 3698.062 kb on + strandat 3698.083 kb on + strandat 3698.089 kb on + strandat 3698.090 kb on - strandat 3698.142 kb on + strandat 3698.297 kb on + strand, within CA264_15840at 3698.309 kb on + strand, within CA264_15840at 3698.310 kb on - strand, within CA264_15840at 3698.310 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.520 kb on + strand, within CA264_15840at 3698.520 kb on + strand, within CA264_15840at 3698.521 kb on - strand, within CA264_15840at 3698.521 kb on - strand, within CA264_15840at 3698.574 kb on - strand, within CA264_15840at 3698.589 kb on - strand, within CA264_15840at 3698.633 kb on + strand, within CA264_15840at 3698.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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3,696,625 + CA264_15830 0.71 -0.1
3,696,628 + CA264_15830 0.72 +0.0
3,696,628 + CA264_15830 0.72 +0.3
3,696,629 - CA264_15830 0.72 +0.4
3,696,629 - CA264_15830 0.72 -0.3
3,696,629 - CA264_15830 0.72 +0.5
3,696,635 + CA264_15830 0.72 -0.4
3,696,636 - CA264_15830 0.72 -1.0
3,696,670 + CA264_15830 0.73 +0.0
3,696,683 + CA264_15830 0.73 +0.3
3,696,683 + CA264_15830 0.73 -0.7
3,696,684 - CA264_15830 0.73 -0.3
3,696,763 - CA264_15830 0.76 +0.4
3,696,839 - CA264_15830 0.78 +0.1
3,696,988 + CA264_15830 0.83 +0.3
3,697,179 - CA264_15830 0.90 -0.1
3,697,179 - CA264_15830 0.90 +0.1
3,697,183 + CA264_15830 0.90 +0.1
3,697,183 + CA264_15830 0.90 +0.8
3,697,183 + CA264_15830 0.90 +0.4
3,697,267 + -0.2
3,697,267 + -0.3
3,697,304 + -0.1
3,697,304 + -2.1
3,697,388 - +0.9
3,697,466 - -0.0
3,697,471 + +2.6
3,697,499 - -0.0
3,697,507 - +1.8
3,697,564 + CA264_15835 0.11 -1.5
3,697,572 - CA264_15835 0.13 +1.0
3,697,617 + CA264_15835 0.24 -0.5
3,697,617 + CA264_15835 0.24 +1.6
3,697,653 - CA264_15835 0.33 -0.2
3,697,662 - CA264_15835 0.35 +0.2
3,697,715 - CA264_15835 0.48 +0.3
3,697,757 + CA264_15835 0.58 -0.3
3,697,807 + CA264_15835 0.70 +0.2
3,697,808 - CA264_15835 0.71 -0.7
3,697,808 - CA264_15835 0.71 +0.9
3,697,871 + CA264_15835 0.86 +0.3
3,697,872 - CA264_15835 0.86 +0.1
3,697,872 - CA264_15835 0.86 +1.2
3,697,908 + +0.1
3,697,909 - -0.4
3,697,919 + -2.7
3,697,920 - -0.4
3,697,920 - -0.7
3,697,920 - +0.4
3,697,925 + +0.3
3,697,925 + +0.6
3,697,926 - -1.1
3,697,926 - -0.3
3,698,007 + +1.4
3,698,010 - -0.3
3,698,031 - +0.3
3,698,031 - -0.6
3,698,058 + +0.5
3,698,062 + +0.9
3,698,062 + -0.3
3,698,062 + +0.8
3,698,083 + +0.0
3,698,089 + -0.0
3,698,090 - +0.2
3,698,142 + +1.0
3,698,297 + CA264_15840 0.25 -2.0
3,698,309 + CA264_15840 0.26 -2.2
3,698,310 - CA264_15840 0.26 -0.5
3,698,310 - CA264_15840 0.26 -1.2
3,698,412 - CA264_15840 0.38 +1.1
3,698,412 - CA264_15840 0.38 +0.9
3,698,412 - CA264_15840 0.38 -1.8
3,698,520 + CA264_15840 0.51 +0.1
3,698,520 + CA264_15840 0.51 +0.1
3,698,521 - CA264_15840 0.51 -0.3
3,698,521 - CA264_15840 0.51 -0.2
3,698,574 - CA264_15840 0.57 -1.0
3,698,589 - CA264_15840 0.59 +1.5
3,698,633 + CA264_15840 0.64 +0.2
3,698,894 + +0.8

Or see this region's nucleotide sequence