Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15765

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15755 and CA264_15760 are separated by 428 nucleotidesCA264_15760 and CA264_15765 are separated by 67 nucleotidesCA264_15765 and CA264_15770 are separated by 170 nucleotides CA264_15755: CA264_15755 - hypothetical protein, at 3,679,800 to 3,680,165 _15755 CA264_15760: CA264_15760 - hypothetical protein, at 3,680,594 to 3,680,938 _15760 CA264_15765: CA264_15765 - T9SS C-terminal target domain-containing protein, at 3,681,006 to 3,681,386 _15765 CA264_15770: CA264_15770 - FAD-dependent oxidoreductase, at 3,681,557 to 3,682,672 _15770 Position (kb) 3681 3682Strain fitness (log2 ratio) -2 -1 0 1 2at 3680.014 kb on + strand, within CA264_15755at 3680.015 kb on - strand, within CA264_15755at 3680.077 kb on + strand, within CA264_15755at 3680.078 kb on - strand, within CA264_15755at 3680.115 kb on + strand, within CA264_15755at 3680.116 kb on - strand, within CA264_15755at 3680.116 kb on - strand, within CA264_15755at 3680.117 kb on + strand, within CA264_15755at 3680.118 kb on - strand, within CA264_15755at 3680.123 kb on - strand, within CA264_15755at 3680.128 kb on + strand, within CA264_15755at 3680.156 kb on - strandat 3680.177 kb on + strandat 3680.185 kb on + strandat 3680.186 kb on - strandat 3680.186 kb on - strandat 3680.254 kb on + strandat 3680.254 kb on + strandat 3680.255 kb on - strandat 3680.336 kb on + strandat 3680.338 kb on + strandat 3680.338 kb on + strandat 3680.339 kb on - strandat 3680.339 kb on - strandat 3680.367 kb on - strandat 3680.369 kb on - strandat 3680.382 kb on + strandat 3680.382 kb on + strandat 3680.420 kb on + strandat 3680.440 kb on + strandat 3680.473 kb on - strandat 3680.517 kb on + strandat 3680.537 kb on + strandat 3680.544 kb on - strandat 3680.561 kb on + strandat 3680.562 kb on - strandat 3680.562 kb on - strandat 3680.565 kb on + strandat 3680.565 kb on + strandat 3680.565 kb on + strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.567 kb on + strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.570 kb on - strandat 3680.570 kb on - strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.576 kb on - strandat 3680.576 kb on - strandat 3680.576 kb on - strandat 3680.587 kb on - strandat 3680.635 kb on - strand, within CA264_15760at 3680.635 kb on - strand, within CA264_15760at 3680.804 kb on + strand, within CA264_15760at 3680.936 kb on + strandat 3680.936 kb on + strandat 3680.993 kb on + strandat 3681.037 kb on + strandat 3681.038 kb on - strandat 3681.042 kb on - strandat 3681.061 kb on + strand, within CA264_15765at 3681.061 kb on + strand, within CA264_15765at 3681.061 kb on + strand, within CA264_15765at 3681.093 kb on - strand, within CA264_15765at 3681.111 kb on - strand, within CA264_15765at 3681.177 kb on + strand, within CA264_15765at 3681.197 kb on + strand, within CA264_15765at 3681.239 kb on - strand, within CA264_15765at 3681.248 kb on + strand, within CA264_15765at 3681.248 kb on + strand, within CA264_15765at 3681.352 kb on - strandat 3681.352 kb on - strandat 3681.352 kb on - strandat 3681.359 kb on + strandat 3681.375 kb on - strandat 3681.387 kb on - strandat 3681.388 kb on + strandat 3681.409 kb on - strandat 3681.418 kb on - strandat 3681.543 kb on - strandat 3681.779 kb on - strand, within CA264_15770at 3681.819 kb on + strand, within CA264_15770at 3681.843 kb on - strand, within CA264_15770at 3681.845 kb on - strand, within CA264_15770at 3681.853 kb on + strand, within CA264_15770at 3681.857 kb on + strand, within CA264_15770at 3681.858 kb on - strand, within CA264_15770at 3681.863 kb on + strand, within CA264_15770at 3681.863 kb on + strand, within CA264_15770at 3681.864 kb on - strand, within CA264_15770at 3681.943 kb on + strand, within CA264_15770at 3682.017 kb on + strand, within CA264_15770at 3682.061 kb on + strand, within CA264_15770at 3682.073 kb on - strand, within CA264_15770at 3682.076 kb on + strand, within CA264_15770at 3682.076 kb on + strand, within CA264_15770at 3682.077 kb on - strand, within CA264_15770at 3682.120 kb on + strand, within CA264_15770at 3682.121 kb on - strand, within CA264_15770at 3682.126 kb on + strand, within CA264_15770at 3682.181 kb on + strand, within CA264_15770at 3682.312 kb on + strand, within CA264_15770at 3682.363 kb on + strand, within CA264_15770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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3,680,014 + CA264_15755 0.58 -0.9
3,680,015 - CA264_15755 0.59 +2.0
3,680,077 + CA264_15755 0.76 +1.0
3,680,078 - CA264_15755 0.76 -0.3
3,680,115 + CA264_15755 0.86 +0.7
3,680,116 - CA264_15755 0.86 +0.2
3,680,116 - CA264_15755 0.86 -0.0
3,680,117 + CA264_15755 0.87 -0.6
3,680,118 - CA264_15755 0.87 +1.1
3,680,123 - CA264_15755 0.88 +0.3
3,680,128 + CA264_15755 0.90 -0.2
3,680,156 - -0.4
3,680,177 + +0.3
3,680,185 + +0.9
3,680,186 - -0.4
3,680,186 - +0.3
3,680,254 + -0.4
3,680,254 + -0.4
3,680,255 - +0.4
3,680,336 + +0.6
3,680,338 + +0.7
3,680,338 + -0.6
3,680,339 - -0.2
3,680,339 - +0.1
3,680,367 - -0.5
3,680,369 - +0.6
3,680,382 + +1.1
3,680,382 + -2.4
3,680,420 + +0.7
3,680,440 + -0.1
3,680,473 - +1.6
3,680,517 + -0.5
3,680,537 + -0.4
3,680,544 - -0.4
3,680,561 + +0.7
3,680,562 - +0.8
3,680,562 - -0.7
3,680,565 + +0.3
3,680,565 + +0.0
3,680,565 + -0.2
3,680,566 - +1.3
3,680,566 - -0.3
3,680,566 - -0.0
3,680,566 - -0.6
3,680,566 - -0.1
3,680,567 + -0.1
3,680,568 - +0.3
3,680,568 - +0.0
3,680,568 - -0.5
3,680,568 - +0.9
3,680,570 - -0.4
3,680,570 - -2.1
3,680,575 + +0.0
3,680,575 + +0.0
3,680,575 + +0.1
3,680,575 + -0.3
3,680,575 + -1.5
3,680,575 + -0.7
3,680,575 + +0.4
3,680,576 - +0.6
3,680,576 - -1.1
3,680,576 - -0.4
3,680,587 - +1.4
3,680,635 - CA264_15760 0.12 -0.1
3,680,635 - CA264_15760 0.12 -0.6
3,680,804 + CA264_15760 0.61 -0.4
3,680,936 + +1.0
3,680,936 + -0.7
3,680,993 + -0.4
3,681,037 + +0.3
3,681,038 - +1.3
3,681,042 - -0.6
3,681,061 + CA264_15765 0.14 +1.5
3,681,061 + CA264_15765 0.14 +0.5
3,681,061 + CA264_15765 0.14 +0.2
3,681,093 - CA264_15765 0.23 -0.9
3,681,111 - CA264_15765 0.28 -0.7
3,681,177 + CA264_15765 0.45 +0.8
3,681,197 + CA264_15765 0.50 -0.1
3,681,239 - CA264_15765 0.61 -0.5
3,681,248 + CA264_15765 0.64 +0.2
3,681,248 + CA264_15765 0.64 -0.1
3,681,352 - +0.1
3,681,352 - -0.8
3,681,352 - +0.2
3,681,359 + +0.4
3,681,375 - +0.1
3,681,387 - -0.1
3,681,388 + +0.4
3,681,409 - -0.0
3,681,418 - -0.0
3,681,543 - +0.3
3,681,779 - CA264_15770 0.20 +0.3
3,681,819 + CA264_15770 0.23 +0.3
3,681,843 - CA264_15770 0.26 +0.8
3,681,845 - CA264_15770 0.26 +0.0
3,681,853 + CA264_15770 0.27 -0.1
3,681,857 + CA264_15770 0.27 -0.2
3,681,858 - CA264_15770 0.27 +0.8
3,681,863 + CA264_15770 0.27 -1.0
3,681,863 + CA264_15770 0.27 +0.3
3,681,864 - CA264_15770 0.28 +0.3
3,681,943 + CA264_15770 0.35 +1.3
3,682,017 + CA264_15770 0.41 +0.0
3,682,061 + CA264_15770 0.45 +0.3
3,682,073 - CA264_15770 0.46 -0.1
3,682,076 + CA264_15770 0.47 +0.1
3,682,076 + CA264_15770 0.47 +0.6
3,682,077 - CA264_15770 0.47 -0.1
3,682,120 + CA264_15770 0.50 -0.4
3,682,121 - CA264_15770 0.51 +0.0
3,682,126 + CA264_15770 0.51 -2.1
3,682,181 + CA264_15770 0.56 +0.1
3,682,312 + CA264_15770 0.68 +0.7
3,682,363 + CA264_15770 0.72 -0.1

Or see this region's nucleotide sequence