Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14385 and CA264_14390 are separated by 64 nucleotides CA264_14390 and CA264_14395 are separated by 18 nucleotides CA264_14395 and CA264_14400 are separated by 195 nucleotides
CA264_14385: CA264_14385 - LD-carboxypeptidase, at 3,377,019 to 3,377,912
_14385
CA264_14390: CA264_14390 - hypothetical protein, at 3,377,977 to 3,379,647
_14390
CA264_14395: CA264_14395 - endonuclease III, at 3,379,666 to 3,380,373
_14395
CA264_14400: CA264_14400 - MBL fold metallo-hydrolase, at 3,380,569 to 3,381,261
_14400
Position (kb)
3377
3378
3379
3380 Strain fitness (log2 ratio)
-1
0
1
2 at 3376.978 kb on - strand at 3376.996 kb on + strand at 3376.996 kb on + strand at 3376.997 kb on - strand at 3377.014 kb on + strand at 3377.015 kb on - strand at 3377.015 kb on - strand at 3377.015 kb on - strand at 3377.231 kb on + strand, within CA264_14385 at 3377.231 kb on + strand, within CA264_14385 at 3377.231 kb on + strand, within CA264_14385 at 3377.344 kb on + strand, within CA264_14385 at 3377.344 kb on + strand, within CA264_14385 at 3377.344 kb on + strand, within CA264_14385 at 3377.389 kb on + strand, within CA264_14385 at 3377.390 kb on - strand, within CA264_14385 at 3377.482 kb on - strand, within CA264_14385 at 3377.631 kb on + strand, within CA264_14385 at 3377.645 kb on - strand, within CA264_14385 at 3377.770 kb on + strand, within CA264_14385 at 3377.770 kb on + strand, within CA264_14385 at 3377.771 kb on - strand, within CA264_14385 at 3377.836 kb on + strand at 3377.895 kb on - strand at 3377.911 kb on - strand at 3377.980 kb on + strand at 3377.980 kb on + strand at 3377.980 kb on + strand at 3377.980 kb on + strand at 3377.980 kb on + strand at 3377.980 kb on + strand at 3377.981 kb on - strand at 3378.002 kb on + strand at 3378.125 kb on - strand at 3378.157 kb on - strand, within CA264_14390 at 3378.223 kb on + strand, within CA264_14390 at 3378.240 kb on + strand, within CA264_14390 at 3378.240 kb on + strand, within CA264_14390 at 3378.244 kb on + strand, within CA264_14390 at 3378.286 kb on + strand, within CA264_14390 at 3378.289 kb on + strand, within CA264_14390 at 3378.291 kb on + strand, within CA264_14390 at 3378.291 kb on + strand, within CA264_14390 at 3378.424 kb on + strand, within CA264_14390 at 3378.427 kb on + strand, within CA264_14390 at 3378.521 kb on + strand, within CA264_14390 at 3378.584 kb on + strand, within CA264_14390 at 3378.612 kb on + strand, within CA264_14390 at 3378.613 kb on - strand, within CA264_14390 at 3378.617 kb on - strand, within CA264_14390 at 3378.619 kb on + strand, within CA264_14390 at 3378.619 kb on + strand, within CA264_14390 at 3378.624 kb on + strand, within CA264_14390 at 3378.689 kb on + strand, within CA264_14390 at 3378.689 kb on + strand, within CA264_14390 at 3378.730 kb on - strand, within CA264_14390 at 3378.797 kb on + strand, within CA264_14390 at 3378.798 kb on - strand, within CA264_14390 at 3378.798 kb on - strand, within CA264_14390 at 3378.802 kb on + strand, within CA264_14390 at 3378.802 kb on + strand, within CA264_14390 at 3378.846 kb on - strand, within CA264_14390 at 3378.873 kb on + strand, within CA264_14390 at 3378.875 kb on + strand, within CA264_14390 at 3378.943 kb on - strand, within CA264_14390 at 3379.213 kb on - strand, within CA264_14390 at 3379.588 kb on + strand at 3379.682 kb on - strand at 3379.709 kb on + strand at 3379.754 kb on + strand, within CA264_14395 at 3379.806 kb on - strand, within CA264_14395 at 3379.900 kb on + strand, within CA264_14395 at 3380.092 kb on + strand, within CA264_14395 at 3380.118 kb on - strand, within CA264_14395 at 3380.204 kb on + strand, within CA264_14395 at 3380.205 kb on - strand, within CA264_14395 at 3380.227 kb on - strand, within CA264_14395 at 3380.373 kb on + strand at 3380.373 kb on + strand at 3380.401 kb on + strand at 3380.477 kb on + strand at 3380.505 kb on + strand at 3380.517 kb on - strand at 3380.517 kb on - strand at 3380.519 kb on - strand at 3380.527 kb on - strand at 3380.545 kb on + strand at 3380.577 kb on + strand at 3380.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 3,376,978 - -1.0 3,376,996 + +0.8 3,376,996 + +0.5 3,376,997 - +0.8 3,377,014 + +1.0 3,377,015 - +0.0 3,377,015 - +1.0 3,377,015 - +0.3 3,377,231 + CA264_14385 0.24 +1.6 3,377,231 + CA264_14385 0.24 +0.4 3,377,231 + CA264_14385 0.24 +0.3 3,377,344 + CA264_14385 0.36 -0.2 3,377,344 + CA264_14385 0.36 -1.4 3,377,344 + CA264_14385 0.36 +0.4 3,377,389 + CA264_14385 0.41 +0.4 3,377,390 - CA264_14385 0.41 +1.4 3,377,482 - CA264_14385 0.52 -0.5 3,377,631 + CA264_14385 0.68 -0.2 3,377,645 - CA264_14385 0.70 +0.6 3,377,770 + CA264_14385 0.84 -0.3 3,377,770 + CA264_14385 0.84 -0.7 3,377,771 - CA264_14385 0.84 -0.2 3,377,836 + -0.2 3,377,895 - -0.3 3,377,911 - +0.2 3,377,980 + +1.0 3,377,980 + +0.1 3,377,980 + -0.4 3,377,980 + +1.0 3,377,980 + +1.0 3,377,980 + +0.3 3,377,981 - -0.5 3,378,002 + +1.1 3,378,125 - +0.4 3,378,157 - CA264_14390 0.11 -0.0 3,378,223 + CA264_14390 0.15 +0.2 3,378,240 + CA264_14390 0.16 -0.6 3,378,240 + CA264_14390 0.16 -0.6 3,378,244 + CA264_14390 0.16 -0.6 3,378,286 + CA264_14390 0.18 -0.2 3,378,289 + CA264_14390 0.19 -0.0 3,378,291 + CA264_14390 0.19 -0.0 3,378,291 + CA264_14390 0.19 +0.7 3,378,424 + CA264_14390 0.27 +0.0 3,378,427 + CA264_14390 0.27 +1.1 3,378,521 + CA264_14390 0.33 +0.6 3,378,584 + CA264_14390 0.36 +0.5 3,378,612 + CA264_14390 0.38 +0.3 3,378,613 - CA264_14390 0.38 +0.0 3,378,617 - CA264_14390 0.38 +0.5 3,378,619 + CA264_14390 0.38 +1.5 3,378,619 + CA264_14390 0.38 -0.3 3,378,624 + CA264_14390 0.39 +1.0 3,378,689 + CA264_14390 0.43 -0.3 3,378,689 + CA264_14390 0.43 +2.6 3,378,730 - CA264_14390 0.45 +0.2 3,378,797 + CA264_14390 0.49 +0.6 3,378,798 - CA264_14390 0.49 +0.3 3,378,798 - CA264_14390 0.49 -0.7 3,378,802 + CA264_14390 0.49 +0.8 3,378,802 + CA264_14390 0.49 -0.4 3,378,846 - CA264_14390 0.52 -0.0 3,378,873 + CA264_14390 0.54 -1.3 3,378,875 + CA264_14390 0.54 +1.0 3,378,943 - CA264_14390 0.58 +1.3 3,379,213 - CA264_14390 0.74 +0.6 3,379,588 + +0.6 3,379,682 - -1.0 3,379,709 + -0.3 3,379,754 + CA264_14395 0.12 -0.4 3,379,806 - CA264_14395 0.20 -0.8 3,379,900 + CA264_14395 0.33 -0.9 3,380,092 + CA264_14395 0.60 +0.7 3,380,118 - CA264_14395 0.64 +0.3 3,380,204 + CA264_14395 0.76 +0.1 3,380,205 - CA264_14395 0.76 +0.1 3,380,227 - CA264_14395 0.79 -0.2 3,380,373 + +0.3 3,380,373 + -1.4 3,380,401 + +0.1 3,380,477 + -0.7 3,380,505 + -0.6 3,380,517 - +0.3 3,380,517 - -0.3 3,380,519 - +0.4 3,380,527 - +1.4 3,380,545 + +0.0 3,380,577 + -0.0 3,380,585 + +0.2
Or see this region's nucleotide sequence