Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13770

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13765 and CA264_13770 are separated by 172 nucleotidesCA264_13770 and CA264_13775 are separated by 775 nucleotides CA264_13765: CA264_13765 - DNA-binding transcriptional regulator OxyR, at 3,216,350 to 3,217,294 _13765 CA264_13770: CA264_13770 - DNA starvation/stationary phase protection protein, at 3,217,467 to 3,217,940 _13770 CA264_13775: CA264_13775 - hypothetical protein, at 3,218,716 to 3,220,203 _13775 Position (kb) 3217 3218Strain fitness (log2 ratio) -2 -1 0 1 2at 3216.622 kb on + strand, within CA264_13765at 3216.622 kb on + strand, within CA264_13765at 3216.752 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.810 kb on + strand, within CA264_13765at 3216.896 kb on + strand, within CA264_13765at 3217.100 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.103 kb on - strand, within CA264_13765at 3217.103 kb on - strand, within CA264_13765at 3217.160 kb on + strand, within CA264_13765at 3217.161 kb on - strand, within CA264_13765at 3217.268 kb on + strandat 3217.272 kb on + strandat 3217.272 kb on + strandat 3217.277 kb on + strandat 3217.277 kb on + strandat 3217.284 kb on - strandat 3217.303 kb on - strandat 3217.306 kb on - strandat 3217.309 kb on + strandat 3217.349 kb on - strandat 3217.349 kb on - strandat 3217.455 kb on - strandat 3217.493 kb on - strandat 3217.549 kb on - strand, within CA264_13770at 3217.558 kb on - strand, within CA264_13770at 3217.561 kb on - strand, within CA264_13770at 3217.622 kb on + strand, within CA264_13770at 3217.722 kb on + strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.933 kb on + strandat 3217.934 kb on - strandat 3217.938 kb on + strandat 3217.938 kb on + strandat 3217.939 kb on - strandat 3218.032 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.060 kb on + strandat 3218.060 kb on + strandat 3218.061 kb on - strandat 3218.061 kb on - strandat 3218.062 kb on + strandat 3218.067 kb on + strandat 3218.068 kb on - strandat 3218.078 kb on + strandat 3218.078 kb on + strandat 3218.082 kb on + strandat 3218.102 kb on + strandat 3218.136 kb on + strandat 3218.189 kb on - strandat 3218.197 kb on - strandat 3218.248 kb on - strandat 3218.293 kb on - strandat 3218.298 kb on - strandat 3218.298 kb on - strandat 3218.310 kb on + strandat 3218.311 kb on - strandat 3218.316 kb on + strandat 3218.317 kb on - strandat 3218.317 kb on - strandat 3218.321 kb on + strandat 3218.322 kb on - strandat 3218.328 kb on - strandat 3218.401 kb on + strandat 3218.434 kb on + strandat 3218.434 kb on + strandat 3218.434 kb on + strandat 3218.469 kb on + strandat 3218.487 kb on - strandat 3218.488 kb on + strandat 3218.489 kb on - strandat 3218.489 kb on - strandat 3218.536 kb on + strandat 3218.552 kb on + strandat 3218.552 kb on + strandat 3218.588 kb on + strandat 3218.589 kb on - strandat 3218.631 kb on + strandat 3218.698 kb on + strandat 3218.699 kb on - strandat 3218.699 kb on - strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.710 kb on + strandat 3218.710 kb on + strandat 3218.711 kb on - strandat 3218.765 kb on - strandat 3218.768 kb on + strandat 3218.769 kb on - strandat 3218.769 kb on - strandat 3218.796 kb on - strandat 3218.803 kb on - strandat 3218.928 kb on + strand, within CA264_13775at 3218.932 kb on - strand, within CA264_13775

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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3,216,622 + CA264_13765 0.29 -0.3
3,216,622 + CA264_13765 0.29 -0.8
3,216,752 + CA264_13765 0.43 +1.6
3,216,792 + CA264_13765 0.47 +0.3
3,216,792 + CA264_13765 0.47 +0.3
3,216,792 + CA264_13765 0.47 +0.1
3,216,810 + CA264_13765 0.49 -0.3
3,216,896 + CA264_13765 0.58 +0.1
3,217,100 + CA264_13765 0.79 -0.6
3,217,102 + CA264_13765 0.80 -0.3
3,217,102 + CA264_13765 0.80 +0.2
3,217,102 + CA264_13765 0.80 +0.2
3,217,102 + CA264_13765 0.80 -0.1
3,217,103 - CA264_13765 0.80 +0.3
3,217,103 - CA264_13765 0.80 -0.5
3,217,160 + CA264_13765 0.86 +0.6
3,217,161 - CA264_13765 0.86 +0.1
3,217,268 + -0.7
3,217,272 + +0.3
3,217,272 + +0.2
3,217,277 + -1.4
3,217,277 + +0.5
3,217,284 - +0.3
3,217,303 - -0.5
3,217,306 - +0.2
3,217,309 + -0.4
3,217,349 - +0.6
3,217,349 - +1.2
3,217,455 - +0.6
3,217,493 - +0.4
3,217,549 - CA264_13770 0.17 +0.4
3,217,558 - CA264_13770 0.19 +0.7
3,217,561 - CA264_13770 0.20 +0.2
3,217,622 + CA264_13770 0.33 +0.4
3,217,722 + CA264_13770 0.54 +0.1
3,217,725 - CA264_13770 0.54 +2.0
3,217,725 - CA264_13770 0.54 -0.8
3,217,933 + +0.1
3,217,934 - -0.2
3,217,938 + +1.7
3,217,938 + -2.0
3,217,939 - -0.4
3,218,032 - +0.4
3,218,057 - -0.1
3,218,057 - -1.0
3,218,057 - -0.4
3,218,060 + -0.2
3,218,060 + +1.1
3,218,061 - -0.5
3,218,061 - -0.3
3,218,062 + +0.6
3,218,067 + +0.0
3,218,068 - -0.2
3,218,078 + +1.6
3,218,078 + +1.6
3,218,082 + -0.2
3,218,102 + -0.6
3,218,136 + +0.2
3,218,189 - +1.3
3,218,197 - -0.9
3,218,248 - +0.4
3,218,293 - -0.3
3,218,298 - +1.9
3,218,298 - +0.6
3,218,310 + -0.6
3,218,311 - +0.7
3,218,316 + -0.3
3,218,317 - +0.3
3,218,317 - -0.9
3,218,321 + -1.2
3,218,322 - -1.1
3,218,328 - +0.2
3,218,401 + +0.5
3,218,434 + +0.7
3,218,434 + -0.6
3,218,434 + +0.2
3,218,469 + +1.6
3,218,487 - +0.4
3,218,488 + +1.7
3,218,489 - -0.4
3,218,489 - -0.6
3,218,536 + +0.0
3,218,552 + -0.6
3,218,552 + +1.1
3,218,588 + -0.0
3,218,589 - -0.4
3,218,631 + +0.1
3,218,698 + +0.0
3,218,699 - +0.2
3,218,699 - -0.5
3,218,708 + +0.1
3,218,708 + -0.4
3,218,708 + -0.2
3,218,708 + +0.0
3,218,709 - +1.2
3,218,709 - -0.5
3,218,709 - -0.5
3,218,709 - -0.5
3,218,710 + -0.1
3,218,710 + -0.3
3,218,711 - +0.1
3,218,765 - +0.4
3,218,768 + -0.2
3,218,769 - +0.7
3,218,769 - -0.3
3,218,796 - +0.3
3,218,803 - -0.2
3,218,928 + CA264_13775 0.14 +0.4
3,218,932 - CA264_13775 0.15 -0.9

Or see this region's nucleotide sequence