Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11915

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11910 and CA264_11915 are separated by 211 nucleotidesCA264_11915 and CA264_11920 are separated by 3 nucleotidesCA264_11920 and CA264_11925 are separated by 88 nucleotides CA264_11910: CA264_11910 - replicative DNA helicase, at 2,768,385 to 2,769,953 _11910 CA264_11915: CA264_11915 - peptidoglycan synthetase, at 2,770,165 to 2,771,550 _11915 CA264_11920: CA264_11920 - DNA polymerase III subunit epsilon, at 2,771,554 to 2,772,360 _11920 CA264_11925: CA264_11925 - hypothetical protein, at 2,772,449 to 2,773,078 _11925 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -2 -1 0 1 2at 2769.965 kb on + strandat 2769.965 kb on + strandat 2769.965 kb on + strandat 2769.965 kb on + strandat 2769.965 kb on + strandat 2769.966 kb on - strandat 2769.966 kb on - strandat 2769.966 kb on - strandat 2769.967 kb on + strandat 2769.967 kb on + strandat 2769.968 kb on - strandat 2769.968 kb on - strandat 2769.973 kb on + strandat 2769.973 kb on + strandat 2769.973 kb on + strandat 2769.973 kb on + strandat 2769.974 kb on - strandat 2769.974 kb on - strandat 2769.974 kb on - strandat 2769.975 kb on + strandat 2769.975 kb on + strandat 2769.975 kb on + strandat 2769.976 kb on - strandat 2769.976 kb on - strandat 2769.977 kb on + strandat 2770.068 kb on - strandat 2770.068 kb on - strandat 2770.068 kb on - strandat 2770.068 kb on - strandat 2770.068 kb on - strandat 2770.092 kb on + strandat 2770.095 kb on + strandat 2770.101 kb on - strandat 2770.101 kb on - strandat 2770.103 kb on - strandat 2770.103 kb on - strandat 2770.107 kb on - strandat 2770.112 kb on - strandat 2770.116 kb on + strandat 2770.120 kb on + strandat 2770.124 kb on + strandat 2770.152 kb on + strandat 2770.152 kb on + strandat 2770.152 kb on + strandat 2770.190 kb on + strandat 2770.190 kb on + strandat 2770.191 kb on - strandat 2770.191 kb on - strandat 2770.191 kb on - strandat 2770.191 kb on - strandat 2770.286 kb on - strandat 2770.724 kb on + strand, within CA264_11915at 2770.781 kb on + strand, within CA264_11915at 2770.871 kb on + strand, within CA264_11915at 2770.904 kb on - strand, within CA264_11915at 2771.485 kb on - strandat 2771.502 kb on + strandat 2771.548 kb on + strandat 2771.548 kb on + strandat 2771.549 kb on - strandat 2771.549 kb on - strandat 2771.549 kb on - strandat 2771.549 kb on - strandat 2771.549 kb on - strandat 2771.554 kb on - strandat 2771.743 kb on + strand, within CA264_11920at 2771.744 kb on - strand, within CA264_11920at 2771.769 kb on + strand, within CA264_11920at 2771.830 kb on + strand, within CA264_11920at 2771.831 kb on - strand, within CA264_11920at 2771.832 kb on + strand, within CA264_11920at 2771.833 kb on - strand, within CA264_11920at 2771.851 kb on - strand, within CA264_11920at 2771.980 kb on + strand, within CA264_11920at 2772.037 kb on + strand, within CA264_11920at 2772.037 kb on + strand, within CA264_11920at 2772.037 kb on + strand, within CA264_11920at 2772.037 kb on + strand, within CA264_11920at 2772.067 kb on + strand, within CA264_11920at 2772.068 kb on - strand, within CA264_11920at 2772.103 kb on - strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.188 kb on - strand, within CA264_11920at 2772.189 kb on + strand, within CA264_11920at 2772.193 kb on - strand, within CA264_11920at 2772.227 kb on - strand, within CA264_11920at 2772.229 kb on - strand, within CA264_11920at 2772.271 kb on + strand, within CA264_11920at 2772.308 kb on - strandat 2772.400 kb on + strandat 2772.400 kb on + strandat 2772.428 kb on + strandat 2772.428 kb on + strandat 2772.428 kb on + strandat 2772.437 kb on + strandat 2772.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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2,769,965 + -0.2
2,769,965 + -1.0
2,769,965 + +0.5
2,769,965 + -0.7
2,769,965 + +0.1
2,769,966 - -0.2
2,769,966 - -0.1
2,769,966 - -0.9
2,769,967 + -1.0
2,769,967 + -1.2
2,769,968 - -0.0
2,769,968 - -0.2
2,769,973 + -1.9
2,769,973 + +0.4
2,769,973 + -0.7
2,769,973 + -0.9
2,769,974 - +0.0
2,769,974 - +0.7
2,769,974 - -0.1
2,769,975 + +0.2
2,769,975 + +0.2
2,769,975 + -0.4
2,769,976 - +0.0
2,769,976 - +0.4
2,769,977 + -0.2
2,770,068 - -0.4
2,770,068 - +0.4
2,770,068 - -0.2
2,770,068 - +0.5
2,770,068 - +0.3
2,770,092 + -1.2
2,770,095 + -0.0
2,770,101 - +0.2
2,770,101 - +1.2
2,770,103 - -0.7
2,770,103 - -0.7
2,770,107 - +2.0
2,770,112 - -0.1
2,770,116 + -0.6
2,770,120 + -0.2
2,770,124 + +0.4
2,770,152 + -0.5
2,770,152 + -0.2
2,770,152 + -0.2
2,770,190 + -0.5
2,770,190 + -1.7
2,770,191 - -0.5
2,770,191 - -0.3
2,770,191 - -0.1
2,770,191 - +0.0
2,770,286 - -0.8
2,770,724 + CA264_11915 0.40 -1.0
2,770,781 + CA264_11915 0.44 +1.4
2,770,871 + CA264_11915 0.51 -0.4
2,770,904 - CA264_11915 0.53 -2.2
2,771,485 - -2.2
2,771,502 + -1.0
2,771,548 + -0.7
2,771,548 + +0.5
2,771,549 - +0.1
2,771,549 - +0.8
2,771,549 - -1.4
2,771,549 - -1.6
2,771,549 - -0.8
2,771,554 - +0.4
2,771,743 + CA264_11920 0.23 +0.2
2,771,744 - CA264_11920 0.24 -2.4
2,771,769 + CA264_11920 0.27 -0.4
2,771,830 + CA264_11920 0.34 -1.5
2,771,831 - CA264_11920 0.34 +0.0
2,771,832 + CA264_11920 0.34 -0.1
2,771,833 - CA264_11920 0.35 +0.3
2,771,851 - CA264_11920 0.37 -0.2
2,771,980 + CA264_11920 0.53 -0.7
2,772,037 + CA264_11920 0.60 +0.9
2,772,037 + CA264_11920 0.60 -0.1
2,772,037 + CA264_11920 0.60 -0.3
2,772,037 + CA264_11920 0.60 -0.3
2,772,067 + CA264_11920 0.64 -0.5
2,772,068 - CA264_11920 0.64 +0.7
2,772,103 - CA264_11920 0.68 -1.0
2,772,126 + CA264_11920 0.71 -1.2
2,772,126 + CA264_11920 0.71 -1.1
2,772,126 + CA264_11920 0.71 -1.0
2,772,126 + CA264_11920 0.71 +0.9
2,772,188 - CA264_11920 0.79 -0.2
2,772,189 + CA264_11920 0.79 -2.0
2,772,193 - CA264_11920 0.79 -0.5
2,772,227 - CA264_11920 0.83 +0.1
2,772,229 - CA264_11920 0.84 +0.5
2,772,271 + CA264_11920 0.89 +0.1
2,772,308 - +0.6
2,772,400 + -0.1
2,772,400 + -0.0
2,772,428 + -0.5
2,772,428 + +0.1
2,772,428 + -0.5
2,772,437 + -0.7
2,772,438 - +0.4

Or see this region's nucleotide sequence