Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10070

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10065 and CA264_10070 are separated by 402 nucleotidesCA264_10070 and CA264_10075 are separated by 478 nucleotides CA264_10065: CA264_10065 - DNA-binding response regulator, at 2,334,890 to 2,335,522 _10065 CA264_10070: CA264_10070 - hypothetical protein, at 2,335,925 to 2,336,308 _10070 CA264_10075: CA264_10075 - hypothetical protein, at 2,336,787 to 2,336,885 _10075 Position (kb) 2335 2336 2337Strain fitness (log2 ratio) -2 -1 0 1 2at 2334.975 kb on - strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2335.012 kb on + strand, within CA264_10065at 2335.123 kb on + strand, within CA264_10065at 2335.124 kb on - strand, within CA264_10065at 2335.124 kb on - strand, within CA264_10065at 2335.268 kb on + strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.487 kb on + strandat 2335.488 kb on - strandat 2335.531 kb on + strandat 2335.600 kb on - strandat 2335.628 kb on + strandat 2335.628 kb on + strandat 2335.629 kb on - strandat 2335.641 kb on + strandat 2335.669 kb on - strandat 2335.721 kb on + strandat 2335.721 kb on + strandat 2335.731 kb on - strandat 2335.731 kb on - strandat 2335.733 kb on - strandat 2335.739 kb on + strandat 2335.739 kb on + strandat 2335.739 kb on + strandat 2335.740 kb on - strandat 2335.740 kb on - strandat 2335.749 kb on + strandat 2335.749 kb on + strandat 2335.749 kb on + strandat 2335.750 kb on - strandat 2335.853 kb on + strandat 2335.854 kb on - strandat 2335.854 kb on - strandat 2335.860 kb on - strandat 2335.860 kb on - strandat 2335.880 kb on - strandat 2335.880 kb on - strandat 2335.880 kb on - strandat 2335.927 kb on - strandat 2335.927 kb on - strandat 2335.936 kb on + strandat 2335.937 kb on - strandat 2336.057 kb on + strand, within CA264_10070at 2336.093 kb on + strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.122 kb on + strand, within CA264_10070at 2336.123 kb on - strand, within CA264_10070at 2336.132 kb on - strand, within CA264_10070at 2336.132 kb on - strand, within CA264_10070at 2336.321 kb on + strandat 2336.321 kb on + strandat 2336.339 kb on + strandat 2336.349 kb on + strandat 2336.350 kb on - strandat 2336.353 kb on - strandat 2336.353 kb on - strandat 2336.353 kb on - strandat 2336.358 kb on + strandat 2336.358 kb on + strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.362 kb on + strandat 2336.362 kb on + strandat 2336.380 kb on - strandat 2336.380 kb on - strandat 2336.389 kb on - strandat 2336.432 kb on + strandat 2336.432 kb on + strandat 2336.433 kb on - strandat 2336.445 kb on + strandat 2336.457 kb on + strandat 2336.471 kb on + strandat 2336.471 kb on + strandat 2336.471 kb on + strandat 2336.586 kb on - strandat 2336.596 kb on + strandat 2336.616 kb on + strandat 2336.617 kb on - strandat 2336.657 kb on + strandat 2336.699 kb on + strandat 2336.700 kb on - strandat 2336.719 kb on + strandat 2336.720 kb on - strandat 2336.720 kb on - strandat 2336.761 kb on - strandat 2336.771 kb on - strandat 2336.900 kb on - strandat 2336.929 kb on + strandat 2336.953 kb on + strandat 2336.953 kb on + strandat 2336.975 kb on + strandat 2336.994 kb on + strandat 2336.994 kb on + strandat 2337.071 kb on + strandat 2337.079 kb on + strandat 2337.155 kb on + strandat 2337.191 kb on - strandat 2337.237 kb on + strandat 2337.246 kb on - strandat 2337.283 kb on - strandat 2337.291 kb on - strandat 2337.291 kb on - strandat 2337.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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2,334,975 - CA264_10065 0.13 -0.4
2,334,976 + CA264_10065 0.14 -2.1
2,334,976 + CA264_10065 0.14 -0.8
2,334,977 - CA264_10065 0.14 -1.1
2,334,977 - CA264_10065 0.14 -1.2
2,335,012 + CA264_10065 0.19 -0.4
2,335,123 + CA264_10065 0.37 -0.8
2,335,124 - CA264_10065 0.37 +0.4
2,335,124 - CA264_10065 0.37 -1.4
2,335,268 + CA264_10065 0.60 +0.2
2,335,269 - CA264_10065 0.60 +0.3
2,335,269 - CA264_10065 0.60 -1.0
2,335,269 - CA264_10065 0.60 +0.1
2,335,487 + -1.3
2,335,488 - +0.1
2,335,531 + +0.6
2,335,600 - +0.1
2,335,628 + +0.7
2,335,628 + -0.4
2,335,629 - -0.3
2,335,641 + +0.8
2,335,669 - -0.6
2,335,721 + -0.3
2,335,721 + -0.1
2,335,731 - -0.5
2,335,731 - +1.2
2,335,733 - +0.3
2,335,739 + -0.2
2,335,739 + +0.7
2,335,739 + +0.1
2,335,740 - -0.1
2,335,740 - +0.1
2,335,749 + +0.8
2,335,749 + -1.2
2,335,749 + +0.8
2,335,750 - -0.0
2,335,853 + +0.3
2,335,854 - +0.8
2,335,854 - -0.4
2,335,860 - -0.1
2,335,860 - +0.2
2,335,880 - -0.6
2,335,880 - +0.1
2,335,880 - +0.3
2,335,927 - +2.1
2,335,927 - +0.8
2,335,936 + +0.4
2,335,937 - +0.8
2,336,057 + CA264_10070 0.34 -0.1
2,336,093 + CA264_10070 0.44 -0.0
2,336,094 - CA264_10070 0.44 +1.1
2,336,094 - CA264_10070 0.44 +0.1
2,336,094 - CA264_10070 0.44 +0.5
2,336,094 - CA264_10070 0.44 +1.7
2,336,122 + CA264_10070 0.51 +0.2
2,336,123 - CA264_10070 0.52 -0.2
2,336,132 - CA264_10070 0.54 +1.5
2,336,132 - CA264_10070 0.54 +0.5
2,336,321 + -0.1
2,336,321 + -2.1
2,336,339 + +0.6
2,336,349 + -0.6
2,336,350 - +0.4
2,336,353 - +0.2
2,336,353 - +1.5
2,336,353 - -0.9
2,336,358 + -1.0
2,336,358 + -0.5
2,336,359 - -2.4
2,336,359 - -0.4
2,336,359 - +1.2
2,336,359 - +0.8
2,336,359 - -0.1
2,336,362 + -0.1
2,336,362 + +0.7
2,336,380 - -1.0
2,336,380 - +0.3
2,336,389 - +1.3
2,336,432 + -0.0
2,336,432 + -0.7
2,336,433 - -1.1
2,336,445 + -0.3
2,336,457 + +0.1
2,336,471 + +0.1
2,336,471 + -0.6
2,336,471 + +0.8
2,336,586 - +0.7
2,336,596 + +0.1
2,336,616 + -1.3
2,336,617 - -1.1
2,336,657 + +0.3
2,336,699 + -0.8
2,336,700 - +0.4
2,336,719 + -0.6
2,336,720 - +1.4
2,336,720 - -0.4
2,336,761 - +0.2
2,336,771 - +1.2
2,336,900 - -0.0
2,336,929 + -0.3
2,336,953 + -0.2
2,336,953 + -0.0
2,336,975 + -0.2
2,336,994 + -0.9
2,336,994 + -0.7
2,337,071 + -0.2
2,337,079 + +0.6
2,337,155 + -0.3
2,337,191 - -0.8
2,337,237 + -0.1
2,337,246 - -0.8
2,337,283 - -1.0
2,337,291 - +0.1
2,337,291 - +0.2
2,337,305 + +0.0

Or see this region's nucleotide sequence