Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09330

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09325 and CA264_09330 are separated by 501 nucleotidesCA264_09330 and CA264_09335 are separated by 98 nucleotides CA264_09325: CA264_09325 - methylglyoxal synthase, at 2,180,451 to 2,180,816 _09325 CA264_09330: CA264_09330 - cold-shock protein, at 2,181,318 to 2,181,536 _09330 CA264_09335: CA264_09335 - serine hydrolase, at 2,181,635 to 2,182,873 _09335 Position (kb) 2181 2182Strain fitness (log2 ratio) -2 -1 0 1 2at 2180.433 kb on + strandat 2180.433 kb on + strandat 2180.434 kb on - strandat 2180.464 kb on - strandat 2180.522 kb on + strand, within CA264_09325at 2180.527 kb on - strand, within CA264_09325at 2180.585 kb on + strand, within CA264_09325at 2180.596 kb on - strand, within CA264_09325at 2180.596 kb on - strand, within CA264_09325at 2180.797 kb on - strandat 2180.821 kb on + strandat 2180.822 kb on - strandat 2180.848 kb on + strandat 2180.849 kb on - strandat 2180.909 kb on - strandat 2180.942 kb on - strandat 2181.001 kb on + strandat 2181.010 kb on - strandat 2181.122 kb on + strandat 2181.150 kb on - strandat 2181.211 kb on - strandat 2181.211 kb on - strandat 2181.254 kb on - strandat 2181.260 kb on + strandat 2181.261 kb on - strandat 2181.262 kb on + strandat 2181.262 kb on + strandat 2181.304 kb on - strandat 2181.317 kb on + strandat 2181.324 kb on - strandat 2181.453 kb on + strand, within CA264_09330at 2181.454 kb on - strand, within CA264_09330at 2181.454 kb on - strand, within CA264_09330at 2181.567 kb on + strandat 2181.568 kb on - strandat 2181.574 kb on + strandat 2181.574 kb on + strandat 2181.574 kb on + strandat 2181.575 kb on - strandat 2181.576 kb on + strandat 2181.576 kb on + strandat 2181.577 kb on - strandat 2181.682 kb on + strandat 2181.726 kb on - strandat 2181.729 kb on + strandat 2181.758 kb on - strandat 2181.758 kb on - strandat 2181.801 kb on + strand, within CA264_09335at 2181.801 kb on + strand, within CA264_09335at 2181.801 kb on + strand, within CA264_09335at 2181.821 kb on + strand, within CA264_09335at 2181.982 kb on + strand, within CA264_09335at 2181.983 kb on - strand, within CA264_09335at 2181.995 kb on + strand, within CA264_09335at 2182.006 kb on - strand, within CA264_09335at 2182.025 kb on + strand, within CA264_09335at 2182.025 kb on + strand, within CA264_09335at 2182.035 kb on - strand, within CA264_09335at 2182.035 kb on - strand, within CA264_09335at 2182.035 kb on - strand, within CA264_09335at 2182.035 kb on - strand, within CA264_09335at 2182.038 kb on + strand, within CA264_09335at 2182.121 kb on - strand, within CA264_09335at 2182.250 kb on - strand, within CA264_09335at 2182.260 kb on + strand, within CA264_09335at 2182.263 kb on + strand, within CA264_09335at 2182.263 kb on + strand, within CA264_09335at 2182.263 kb on + strand, within CA264_09335at 2182.263 kb on + strand, within CA264_09335at 2182.263 kb on + strand, within CA264_09335at 2182.264 kb on - strand, within CA264_09335at 2182.353 kb on + strand, within CA264_09335at 2182.353 kb on + strand, within CA264_09335at 2182.359 kb on + strand, within CA264_09335at 2182.359 kb on + strand, within CA264_09335at 2182.431 kb on + strand, within CA264_09335at 2182.432 kb on - strand, within CA264_09335at 2182.432 kb on - strand, within CA264_09335at 2182.452 kb on + strand, within CA264_09335at 2182.453 kb on - strand, within CA264_09335at 2182.457 kb on - strand, within CA264_09335at 2182.484 kb on - strand, within CA264_09335

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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2,180,433 + -0.1
2,180,433 + +0.3
2,180,434 - -0.0
2,180,464 - +0.4
2,180,522 + CA264_09325 0.19 -0.4
2,180,527 - CA264_09325 0.21 +0.1
2,180,585 + CA264_09325 0.37 -1.3
2,180,596 - CA264_09325 0.40 -0.3
2,180,596 - CA264_09325 0.40 +0.0
2,180,797 - -0.2
2,180,821 + -0.1
2,180,822 - -0.1
2,180,848 + +0.0
2,180,849 - -0.1
2,180,909 - -0.3
2,180,942 - -0.2
2,181,001 + -0.6
2,181,010 - -0.3
2,181,122 + -0.3
2,181,150 - -0.5
2,181,211 - -0.0
2,181,211 - +0.5
2,181,254 - +0.8
2,181,260 + -1.5
2,181,261 - -0.5
2,181,262 + +1.1
2,181,262 + +0.0
2,181,304 - -0.1
2,181,317 + -0.0
2,181,324 - -1.4
2,181,453 + CA264_09330 0.62 -1.8
2,181,454 - CA264_09330 0.62 -0.1
2,181,454 - CA264_09330 0.62 -1.9
2,181,567 + -0.2
2,181,568 - -1.6
2,181,574 + +0.7
2,181,574 + -0.7
2,181,574 + -0.2
2,181,575 - -0.1
2,181,576 + -1.1
2,181,576 + +0.1
2,181,577 - -0.3
2,181,682 + -1.4
2,181,726 - +0.4
2,181,729 + +0.3
2,181,758 - -0.1
2,181,758 - +1.9
2,181,801 + CA264_09335 0.13 -0.4
2,181,801 + CA264_09335 0.13 +0.4
2,181,801 + CA264_09335 0.13 -1.3
2,181,821 + CA264_09335 0.15 -0.3
2,181,982 + CA264_09335 0.28 +2.0
2,181,983 - CA264_09335 0.28 -1.0
2,181,995 + CA264_09335 0.29 -0.9
2,182,006 - CA264_09335 0.30 -1.9
2,182,025 + CA264_09335 0.31 -0.8
2,182,025 + CA264_09335 0.31 +0.9
2,182,035 - CA264_09335 0.32 -0.6
2,182,035 - CA264_09335 0.32 -0.1
2,182,035 - CA264_09335 0.32 +0.1
2,182,035 - CA264_09335 0.32 -0.1
2,182,038 + CA264_09335 0.33 +0.3
2,182,121 - CA264_09335 0.39 -0.3
2,182,250 - CA264_09335 0.50 +0.1
2,182,260 + CA264_09335 0.50 +0.0
2,182,263 + CA264_09335 0.51 +1.4
2,182,263 + CA264_09335 0.51 +0.1
2,182,263 + CA264_09335 0.51 -1.1
2,182,263 + CA264_09335 0.51 -0.2
2,182,263 + CA264_09335 0.51 +0.7
2,182,264 - CA264_09335 0.51 -0.3
2,182,353 + CA264_09335 0.58 -0.7
2,182,353 + CA264_09335 0.58 -0.2
2,182,359 + CA264_09335 0.58 -1.6
2,182,359 + CA264_09335 0.58 -0.2
2,182,431 + CA264_09335 0.64 -1.2
2,182,432 - CA264_09335 0.64 -0.2
2,182,432 - CA264_09335 0.64 +0.0
2,182,452 + CA264_09335 0.66 +0.4
2,182,453 - CA264_09335 0.66 +0.0
2,182,457 - CA264_09335 0.66 -0.0
2,182,484 - CA264_09335 0.69 +0.1

Or see this region's nucleotide sequence