Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08260 and CA264_08265 are separated by 260 nucleotides CA264_08265 and CA264_08270 are separated by 33 nucleotides CA264_08270 and CA264_08275 are separated by 19 nucleotides CA264_08275 and CA264_08280 are separated by 0 nucleotides
CA264_08260: CA264_08260 - pseudouridine synthase, at 1,909,432 to 1,910,028
_08260
CA264_08265: CA264_08265 - iron-sulfur cluster assembly accessory protein, at 1,910,289 to 1,910,615
_08265
CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103
_08270
CA264_08275: CA264_08275 - ABC transporter ATP-binding protein, at 1,912,123 to 1,912,893
_08275
CA264_08280: CA264_08280 - Fe-S cluster assembly protein SufD, at 1,912,894 to 1,914,234
_08280
Position (kb)
1910
1911
1912
1913 Strain fitness (log2 ratio)
-2
-1
0
1 at 1909.649 kb on - strand, within CA264_08260 at 1909.714 kb on - strand, within CA264_08260 at 1909.714 kb on - strand, within CA264_08260 at 1909.719 kb on - strand, within CA264_08260 at 1909.732 kb on + strand, within CA264_08260 at 1909.733 kb on - strand, within CA264_08260 at 1909.758 kb on + strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.848 kb on + strand, within CA264_08260 at 1909.848 kb on + strand, within CA264_08260 at 1909.976 kb on + strand at 1910.042 kb on - strand at 1910.074 kb on + strand at 1910.135 kb on + strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.195 kb on - strand at 1910.199 kb on + strand at 1910.200 kb on - strand at 1910.204 kb on + strand at 1910.204 kb on + strand at 1910.226 kb on + strand at 1910.236 kb on - strand at 1910.240 kb on - strand at 1910.320 kb on - strand at 1910.320 kb on - strand at 1910.368 kb on + strand, within CA264_08265 at 1910.368 kb on + strand, within CA264_08265 at 1910.369 kb on - strand, within CA264_08265 at 1910.472 kb on - strand, within CA264_08265 at 1910.564 kb on + strand, within CA264_08265 at 1910.666 kb on + strand at 1910.667 kb on - strand at 1910.667 kb on - strand at 1910.667 kb on - strand at 1910.669 kb on + strand at 1910.890 kb on + strand, within CA264_08270 at 1910.890 kb on + strand, within CA264_08270 at 1910.903 kb on + strand, within CA264_08270 at 1910.914 kb on - strand, within CA264_08270 at 1910.959 kb on + strand, within CA264_08270 at 1910.960 kb on - strand, within CA264_08270 at 1911.057 kb on - strand, within CA264_08270 at 1911.075 kb on + strand, within CA264_08270 at 1911.104 kb on + strand, within CA264_08270 at 1911.240 kb on + strand, within CA264_08270 at 1911.240 kb on + strand, within CA264_08270 at 1911.241 kb on - strand, within CA264_08270 at 1911.329 kb on + strand, within CA264_08270 at 1911.357 kb on - strand, within CA264_08270 at 1911.360 kb on + strand, within CA264_08270 at 1911.448 kb on + strand, within CA264_08270 at 1911.453 kb on + strand, within CA264_08270 at 1911.454 kb on - strand, within CA264_08270 at 1911.454 kb on - strand, within CA264_08270 at 1911.508 kb on - strand, within CA264_08270 at 1911.571 kb on + strand, within CA264_08270 at 1911.572 kb on - strand, within CA264_08270 at 1911.699 kb on + strand, within CA264_08270 at 1911.728 kb on + strand, within CA264_08270 at 1911.744 kb on - strand, within CA264_08270 at 1911.744 kb on - strand, within CA264_08270 at 1911.771 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.908 kb on - strand, within CA264_08270 at 1911.908 kb on - strand, within CA264_08270 at 1911.973 kb on + strand at 1911.973 kb on + strand at 1911.974 kb on - strand at 1912.012 kb on - strand at 1912.073 kb on - strand at 1912.096 kb on + strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.104 kb on + strand at 1912.127 kb on + strand at 1912.154 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.208 kb on + strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.343 kb on + strand, within CA264_08275 at 1912.406 kb on - strand, within CA264_08275 at 1912.440 kb on - strand, within CA264_08275 at 1912.891 kb on + strand at 1912.891 kb on + strand at 1912.892 kb on - strand at 1912.892 kb on - strand at 1912.911 kb on + strand at 1912.914 kb on - strand at 1912.914 kb on - strand at 1912.989 kb on - strand at 1912.997 kb on + strand at 1913.066 kb on - strand, within CA264_08280 at 1913.067 kb on + strand, within CA264_08280 at 1913.068 kb on - strand, within CA264_08280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,909,649 - CA264_08260 0.36 -0.6 1,909,714 - CA264_08260 0.47 +1.1 1,909,714 - CA264_08260 0.47 +0.1 1,909,719 - CA264_08260 0.48 +0.1 1,909,732 + CA264_08260 0.50 -0.2 1,909,733 - CA264_08260 0.50 -0.1 1,909,758 + CA264_08260 0.55 +0.5 1,909,759 - CA264_08260 0.55 +0.2 1,909,759 - CA264_08260 0.55 +0.1 1,909,759 - CA264_08260 0.55 -0.3 1,909,848 + CA264_08260 0.70 +0.0 1,909,848 + CA264_08260 0.70 -0.1 1,909,976 + +1.0 1,910,042 - +0.8 1,910,074 + -0.1 1,910,135 + -0.3 1,910,136 - +0.2 1,910,136 - +0.5 1,910,136 - -0.6 1,910,136 - +0.1 1,910,195 - +0.4 1,910,199 + -1.5 1,910,200 - +0.0 1,910,204 + -0.6 1,910,204 + -1.8 1,910,226 + -0.7 1,910,236 - -0.2 1,910,240 - -0.4 1,910,320 - -1.4 1,910,320 - -1.8 1,910,368 + CA264_08265 0.24 -1.7 1,910,368 + CA264_08265 0.24 -2.3 1,910,369 - CA264_08265 0.24 -0.6 1,910,472 - CA264_08265 0.56 -1.1 1,910,564 + CA264_08265 0.84 -1.5 1,910,666 + -0.3 1,910,667 - +0.5 1,910,667 - -0.2 1,910,667 - +0.1 1,910,669 + -2.5 1,910,890 + CA264_08270 0.17 -0.3 1,910,890 + CA264_08270 0.17 +0.2 1,910,903 + CA264_08270 0.17 +0.2 1,910,914 - CA264_08270 0.18 -0.2 1,910,959 + CA264_08270 0.21 +0.1 1,910,960 - CA264_08270 0.21 -0.3 1,911,057 - CA264_08270 0.28 -0.7 1,911,075 + CA264_08270 0.29 +0.6 1,911,104 + CA264_08270 0.31 -0.4 1,911,240 + CA264_08270 0.41 -1.0 1,911,240 + CA264_08270 0.41 -0.3 1,911,241 - CA264_08270 0.41 +0.2 1,911,329 + CA264_08270 0.47 +0.5 1,911,357 - CA264_08270 0.49 +1.3 1,911,360 + CA264_08270 0.49 -0.0 1,911,448 + CA264_08270 0.55 -0.7 1,911,453 + CA264_08270 0.55 -0.9 1,911,454 - CA264_08270 0.55 -1.8 1,911,454 - CA264_08270 0.55 +0.7 1,911,508 - CA264_08270 0.59 +0.3 1,911,571 + CA264_08270 0.63 -0.4 1,911,572 - CA264_08270 0.63 +0.1 1,911,699 + CA264_08270 0.72 -0.7 1,911,728 + CA264_08270 0.74 -0.3 1,911,744 - CA264_08270 0.75 +0.2 1,911,744 - CA264_08270 0.75 +0.2 1,911,771 + CA264_08270 0.77 +0.4 1,911,866 + CA264_08270 0.84 +0.7 1,911,866 + CA264_08270 0.84 +1.2 1,911,866 + CA264_08270 0.84 +0.3 1,911,908 - CA264_08270 0.87 +0.8 1,911,908 - CA264_08270 0.87 -0.2 1,911,973 + -0.8 1,911,973 + -0.6 1,911,974 - -0.8 1,912,012 - +0.3 1,912,073 - -0.2 1,912,096 + +0.5 1,912,097 - -0.7 1,912,097 - -0.3 1,912,097 - +0.4 1,912,097 - +0.0 1,912,104 + -0.7 1,912,127 + +0.2 1,912,154 + +0.5 1,912,181 + -0.1 1,912,181 + +0.7 1,912,181 + +0.2 1,912,208 + CA264_08275 0.11 -0.8 1,912,280 - CA264_08275 0.20 -0.2 1,912,280 - CA264_08275 0.20 -2.3 1,912,281 + CA264_08275 0.20 -0.4 1,912,281 + CA264_08275 0.20 -0.5 1,912,286 + CA264_08275 0.21 +1.3 1,912,286 + CA264_08275 0.21 -0.8 1,912,343 + CA264_08275 0.29 +0.1 1,912,406 - CA264_08275 0.37 -0.3 1,912,440 - CA264_08275 0.41 +0.4 1,912,891 + +0.3 1,912,891 + -0.8 1,912,892 - -0.3 1,912,892 - -0.3 1,912,911 + -0.1 1,912,914 - +0.1 1,912,914 - +1.6 1,912,989 - -0.4 1,912,997 + +0.7 1,913,066 - CA264_08280 0.13 -0.3 1,913,067 + CA264_08280 0.13 -1.9 1,913,068 - CA264_08280 0.13 -0.9
Or see this region's nucleotide sequence