Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08225 and CA264_08230 are separated by 184 nucleotides CA264_08230 and CA264_08235 are separated by 767 nucleotides
CA264_08225: CA264_08225 - zinc-binding oxidoreductase, at 1,901,555 to 1,902,505
_08225
CA264_08230: CA264_08230 - TetR family transcriptional regulator, at 1,902,690 to 1,903,223
_08230
CA264_08235: CA264_08235 - hypothetical protein, at 1,903,991 to 1,904,581
_08235
Position (kb)
1902
1903
1904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1901.770 kb on + strand, within CA264_08225 at 1901.817 kb on - strand, within CA264_08225 at 1901.896 kb on + strand, within CA264_08225 at 1901.897 kb on - strand, within CA264_08225 at 1901.904 kb on + strand, within CA264_08225 at 1901.938 kb on + strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1901.939 kb on - strand, within CA264_08225 at 1902.038 kb on + strand, within CA264_08225 at 1902.079 kb on - strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.181 kb on + strand, within CA264_08225 at 1902.182 kb on - strand, within CA264_08225 at 1902.182 kb on - strand, within CA264_08225 at 1902.184 kb on - strand, within CA264_08225 at 1902.196 kb on + strand, within CA264_08225 at 1902.209 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.231 kb on + strand, within CA264_08225 at 1902.232 kb on - strand, within CA264_08225 at 1902.233 kb on + strand, within CA264_08225 at 1902.234 kb on - strand, within CA264_08225 at 1902.266 kb on - strand, within CA264_08225 at 1902.364 kb on - strand, within CA264_08225 at 1902.394 kb on + strand, within CA264_08225 at 1902.394 kb on + strand, within CA264_08225 at 1902.395 kb on - strand, within CA264_08225 at 1902.450 kb on - strand at 1902.505 kb on + strand at 1902.523 kb on + strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.524 kb on - strand at 1902.562 kb on - strand at 1902.562 kb on - strand at 1902.622 kb on - strand at 1902.628 kb on - strand at 1902.646 kb on + strand at 1902.647 kb on - strand at 1902.653 kb on - strand at 1902.693 kb on + strand at 1902.693 kb on + strand at 1902.694 kb on - strand at 1902.694 kb on - strand at 1902.699 kb on - strand at 1902.700 kb on + strand at 1902.700 kb on + strand at 1902.701 kb on - strand at 1902.738 kb on - strand at 1902.767 kb on - strand, within CA264_08230 at 1902.811 kb on - strand, within CA264_08230 at 1902.811 kb on - strand, within CA264_08230 at 1902.995 kb on - strand, within CA264_08230 at 1903.124 kb on + strand, within CA264_08230 at 1903.124 kb on + strand, within CA264_08230 at 1903.151 kb on + strand, within CA264_08230 at 1903.152 kb on - strand, within CA264_08230 at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.203 kb on + strand at 1903.204 kb on - strand at 1903.218 kb on - strand at 1903.249 kb on + strand at 1903.309 kb on + strand at 1903.330 kb on + strand at 1903.331 kb on - strand at 1903.331 kb on - strand at 1903.331 kb on - strand at 1903.339 kb on - strand at 1903.497 kb on + strand at 1903.497 kb on + strand at 1903.498 kb on - strand at 1903.510 kb on - strand at 1903.600 kb on - strand at 1903.600 kb on - strand at 1903.602 kb on + strand at 1903.631 kb on - strand at 1903.632 kb on + strand at 1903.633 kb on - strand at 1903.700 kb on - strand at 1903.700 kb on - strand at 1903.700 kb on - strand at 1903.703 kb on + strand at 1903.707 kb on - strand at 1903.741 kb on + strand at 1903.742 kb on - strand at 1903.742 kb on - strand at 1903.841 kb on - strand at 1903.875 kb on + strand at 1903.957 kb on - strand at 1903.959 kb on - strand at 1903.968 kb on + strand at 1903.970 kb on + strand at 1903.970 kb on + strand at 1903.970 kb on + strand at 1903.970 kb on + strand at 1903.971 kb on - strand at 1903.971 kb on - strand at 1903.971 kb on - strand at 1904.009 kb on + strand at 1904.009 kb on + strand at 1904.046 kb on + strand at 1904.047 kb on - strand at 1904.080 kb on + strand, within CA264_08235 at 1904.088 kb on + strand, within CA264_08235 at 1904.162 kb on - strand, within CA264_08235 at 1904.163 kb on + strand, within CA264_08235 at 1904.163 kb on + strand, within CA264_08235 at 1904.164 kb on - strand, within CA264_08235 at 1904.164 kb on - strand, within CA264_08235 at 1904.180 kb on - strand, within CA264_08235
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,901,770 + CA264_08225 0.23 -0.0 1,901,817 - CA264_08225 0.28 +1.1 1,901,896 + CA264_08225 0.36 -1.4 1,901,897 - CA264_08225 0.36 +1.0 1,901,904 + CA264_08225 0.37 +0.2 1,901,938 + CA264_08225 0.40 -0.1 1,901,939 - CA264_08225 0.40 +0.3 1,901,939 - CA264_08225 0.40 +0.3 1,901,939 - CA264_08225 0.40 +0.9 1,902,038 + CA264_08225 0.51 +0.7 1,902,079 - CA264_08225 0.55 +1.2 1,902,181 + CA264_08225 0.66 -0.3 1,902,181 + CA264_08225 0.66 +0.1 1,902,181 + CA264_08225 0.66 +0.6 1,902,181 + CA264_08225 0.66 +0.4 1,902,182 - CA264_08225 0.66 +1.7 1,902,182 - CA264_08225 0.66 +0.2 1,902,184 - CA264_08225 0.66 +0.7 1,902,196 + CA264_08225 0.67 +0.7 1,902,209 + CA264_08225 0.69 +1.0 1,902,231 + CA264_08225 0.71 +0.3 1,902,231 + CA264_08225 0.71 -2.2 1,902,231 + CA264_08225 0.71 -1.4 1,902,231 + CA264_08225 0.71 +1.9 1,902,232 - CA264_08225 0.71 +1.2 1,902,233 + CA264_08225 0.71 -0.7 1,902,234 - CA264_08225 0.71 +0.0 1,902,266 - CA264_08225 0.75 +1.3 1,902,364 - CA264_08225 0.85 -2.2 1,902,394 + CA264_08225 0.88 -0.3 1,902,394 + CA264_08225 0.88 -0.3 1,902,395 - CA264_08225 0.88 -0.8 1,902,450 - -1.4 1,902,505 + +0.4 1,902,523 + +0.3 1,902,524 - +0.9 1,902,524 - +0.4 1,902,524 - +0.5 1,902,524 - +2.3 1,902,562 - +0.3 1,902,562 - +0.4 1,902,622 - -0.4 1,902,628 - +0.6 1,902,646 + +0.0 1,902,647 - -0.1 1,902,653 - +0.9 1,902,693 + +0.9 1,902,693 + +0.1 1,902,694 - +1.6 1,902,694 - +0.8 1,902,699 - +1.7 1,902,700 + -0.7 1,902,700 + -0.4 1,902,701 - +0.5 1,902,738 - -1.0 1,902,767 - CA264_08230 0.14 +0.3 1,902,811 - CA264_08230 0.23 -0.4 1,902,811 - CA264_08230 0.23 -0.3 1,902,995 - CA264_08230 0.57 +1.5 1,903,124 + CA264_08230 0.81 +0.7 1,903,124 + CA264_08230 0.81 +0.9 1,903,151 + CA264_08230 0.86 +0.5 1,903,152 - CA264_08230 0.87 -0.3 1,903,203 + +0.4 1,903,203 + -0.1 1,903,203 + +1.7 1,903,203 + -0.3 1,903,203 + -1.1 1,903,204 - +0.7 1,903,218 - -0.1 1,903,249 + +0.2 1,903,309 + -0.2 1,903,330 + +0.1 1,903,331 - +0.6 1,903,331 - +0.7 1,903,331 - +1.2 1,903,339 - +0.6 1,903,497 + -0.7 1,903,497 + -0.5 1,903,498 - +0.5 1,903,510 - +0.3 1,903,600 - +0.6 1,903,600 - +0.4 1,903,602 + +0.7 1,903,631 - +1.5 1,903,632 + +0.3 1,903,633 - +0.3 1,903,700 - +0.5 1,903,700 - +0.2 1,903,700 - +1.4 1,903,703 + +1.8 1,903,707 - +0.6 1,903,741 + +0.3 1,903,742 - +0.7 1,903,742 - +0.5 1,903,841 - +0.5 1,903,875 + +0.3 1,903,957 - -0.7 1,903,959 - +0.4 1,903,968 + -0.1 1,903,970 + +0.2 1,903,970 + -0.5 1,903,970 + -0.3 1,903,970 + +1.1 1,903,971 - +0.2 1,903,971 - +0.2 1,903,971 - -0.3 1,904,009 + +1.0 1,904,009 + +0.6 1,904,046 + -0.2 1,904,047 - +1.3 1,904,080 + CA264_08235 0.15 +0.3 1,904,088 + CA264_08235 0.16 -0.4 1,904,162 - CA264_08235 0.29 +0.9 1,904,163 + CA264_08235 0.29 -0.1 1,904,163 + CA264_08235 0.29 +1.3 1,904,164 - CA264_08235 0.29 -1.4 1,904,164 - CA264_08235 0.29 -0.0 1,904,180 - CA264_08235 0.32 +1.2
Or see this region's nucleotide sequence