Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07895 and CA264_07900 are separated by 372 nucleotides CA264_07900 and CA264_07905 are separated by 155 nucleotides CA264_07905 and CA264_07910 are separated by 127 nucleotides
CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294
_07895
CA264_07900: CA264_07900 - hypothetical protein, at 1,827,667 to 1,828,047
_07900
CA264_07905: CA264_07905 - tRNA-specific adenosine deaminase, at 1,828,203 to 1,828,688
_07905
CA264_07910: CA264_07910 - HAMP domain-containing histidine kinase, at 1,828,816 to 1,830,330
_07910
Position (kb)
1828
1829 Strain fitness (log2 ratio)
-1
0
1
2 at 1827.295 kb on + strand at 1827.295 kb on + strand at 1827.330 kb on + strand at 1827.331 kb on - strand at 1827.350 kb on + strand at 1827.363 kb on - strand at 1827.389 kb on - strand at 1827.422 kb on - strand at 1827.448 kb on - strand at 1827.480 kb on + strand at 1827.503 kb on + strand at 1827.513 kb on - strand at 1827.529 kb on - strand at 1827.546 kb on + strand at 1827.546 kb on + strand at 1827.547 kb on - strand at 1827.552 kb on + strand at 1827.553 kb on - strand at 1827.553 kb on - strand at 1827.557 kb on - strand at 1827.606 kb on - strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.648 kb on - strand at 1827.649 kb on + strand at 1827.650 kb on - strand at 1827.693 kb on - strand at 1827.693 kb on - strand at 1827.739 kb on - strand, within CA264_07900 at 1827.772 kb on - strand, within CA264_07900 at 1827.780 kb on + strand, within CA264_07900 at 1827.780 kb on + strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1828.061 kb on - strand at 1828.128 kb on + strand at 1828.150 kb on + strand at 1828.155 kb on - strand at 1828.161 kb on + strand at 1828.306 kb on + strand, within CA264_07905 at 1828.307 kb on - strand, within CA264_07905 at 1828.328 kb on - strand, within CA264_07905 at 1828.446 kb on + strand, within CA264_07905 at 1828.447 kb on - strand, within CA264_07905 at 1828.488 kb on + strand, within CA264_07905 at 1828.488 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.513 kb on - strand, within CA264_07905 at 1828.516 kb on - strand, within CA264_07905 at 1828.566 kb on - strand, within CA264_07905 at 1828.621 kb on + strand, within CA264_07905 at 1828.708 kb on + strand at 1828.709 kb on - strand at 1828.734 kb on - strand at 1828.815 kb on + strand at 1828.815 kb on + strand at 1828.815 kb on + strand at 1828.838 kb on - strand at 1828.862 kb on + strand at 1828.891 kb on - strand at 1828.908 kb on - strand at 1828.908 kb on - strand at 1828.923 kb on + strand at 1828.949 kb on + strand at 1828.949 kb on + strand at 1829.050 kb on + strand, within CA264_07910 at 1829.051 kb on - strand, within CA264_07910 at 1829.069 kb on - strand, within CA264_07910 at 1829.233 kb on + strand, within CA264_07910 at 1829.249 kb on + strand, within CA264_07910 at 1829.249 kb on + strand, within CA264_07910 at 1829.250 kb on - strand, within CA264_07910 at 1829.294 kb on + strand, within CA264_07910 at 1829.306 kb on + strand, within CA264_07910 at 1829.307 kb on - strand, within CA264_07910 at 1829.332 kb on + strand, within CA264_07910 at 1829.391 kb on - strand, within CA264_07910 at 1829.391 kb on - strand, within CA264_07910 at 1829.523 kb on + strand, within CA264_07910 at 1829.615 kb on + strand, within CA264_07910 at 1829.615 kb on + strand, within CA264_07910 at 1829.616 kb on - strand, within CA264_07910 at 1829.650 kb on + strand, within CA264_07910 at 1829.650 kb on + strand, within CA264_07910 at 1829.651 kb on - strand, within CA264_07910
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,827,295 + -0.1 1,827,295 + +0.2 1,827,330 + -0.6 1,827,331 - -0.5 1,827,350 + +0.2 1,827,363 - +0.1 1,827,389 - -0.1 1,827,422 - -0.6 1,827,448 - +0.3 1,827,480 + +0.1 1,827,503 + -0.0 1,827,513 - -0.0 1,827,529 - -0.3 1,827,546 + -0.0 1,827,546 + +0.2 1,827,547 - +0.3 1,827,552 + +1.7 1,827,553 - -0.2 1,827,553 - +0.1 1,827,557 - +1.4 1,827,606 - +2.3 1,827,647 + +0.2 1,827,647 + -0.2 1,827,647 + -0.3 1,827,647 + -0.2 1,827,648 - +0.5 1,827,649 + -0.0 1,827,650 - +0.1 1,827,693 - -0.8 1,827,693 - -0.5 1,827,739 - CA264_07900 0.19 -0.1 1,827,772 - CA264_07900 0.28 -0.6 1,827,780 + CA264_07900 0.30 -0.6 1,827,780 + CA264_07900 0.30 +0.0 1,827,781 - CA264_07900 0.30 -0.3 1,827,781 - CA264_07900 0.30 +0.4 1,827,781 - CA264_07900 0.30 +0.3 1,827,781 - CA264_07900 0.30 -0.4 1,828,061 - +0.0 1,828,128 + -0.3 1,828,150 + -0.0 1,828,155 - +1.5 1,828,161 + -0.2 1,828,306 + CA264_07905 0.21 +0.3 1,828,307 - CA264_07905 0.21 +1.2 1,828,328 - CA264_07905 0.26 -0.2 1,828,446 + CA264_07905 0.50 -0.5 1,828,447 - CA264_07905 0.50 +0.2 1,828,488 + CA264_07905 0.59 +0.4 1,828,488 + CA264_07905 0.59 +0.1 1,828,510 + CA264_07905 0.63 +0.3 1,828,510 + CA264_07905 0.63 -0.3 1,828,510 + CA264_07905 0.63 +0.2 1,828,511 - CA264_07905 0.63 +0.1 1,828,511 - CA264_07905 0.63 +1.4 1,828,511 - CA264_07905 0.63 +1.1 1,828,512 + CA264_07905 0.64 +0.1 1,828,512 + CA264_07905 0.64 -0.3 1,828,512 + CA264_07905 0.64 -0.1 1,828,513 - CA264_07905 0.64 +0.1 1,828,516 - CA264_07905 0.64 +0.8 1,828,566 - CA264_07905 0.75 -0.1 1,828,621 + CA264_07905 0.86 +0.1 1,828,708 + -0.2 1,828,709 - -0.5 1,828,734 - -0.3 1,828,815 + -0.3 1,828,815 + -1.0 1,828,815 + +0.2 1,828,838 - -0.1 1,828,862 + -0.2 1,828,891 - +0.7 1,828,908 - +0.7 1,828,908 - -0.2 1,828,923 + -0.3 1,828,949 + -0.2 1,828,949 + +1.3 1,829,050 + CA264_07910 0.15 -0.2 1,829,051 - CA264_07910 0.16 +0.5 1,829,069 - CA264_07910 0.17 -1.2 1,829,233 + CA264_07910 0.28 +1.3 1,829,249 + CA264_07910 0.29 +1.5 1,829,249 + CA264_07910 0.29 -1.2 1,829,250 - CA264_07910 0.29 -0.0 1,829,294 + CA264_07910 0.32 +0.7 1,829,306 + CA264_07910 0.32 +0.1 1,829,307 - CA264_07910 0.32 +0.5 1,829,332 + CA264_07910 0.34 -0.0 1,829,391 - CA264_07910 0.38 +0.2 1,829,391 - CA264_07910 0.38 -0.5 1,829,523 + CA264_07910 0.47 -0.0 1,829,615 + CA264_07910 0.53 -0.5 1,829,615 + CA264_07910 0.53 -0.8 1,829,616 - CA264_07910 0.53 -0.1 1,829,650 + CA264_07910 0.55 +1.3 1,829,650 + CA264_07910 0.55 -0.6 1,829,651 - CA264_07910 0.55 +0.9
Or see this region's nucleotide sequence