Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07270

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07265 and CA264_07270 are separated by 548 nucleotidesCA264_07270 and CA264_07275 are separated by 317 nucleotidesCA264_07275 and CA264_07280 are separated by 1 nucleotides CA264_07265: CA264_07265 - patatin, at 1,676,517 to 1,678,847 _07265 CA264_07270: CA264_07270 - hypothetical protein, at 1,679,396 to 1,679,869 _07270 CA264_07275: CA264_07275 - hypothetical protein, at 1,680,187 to 1,680,816 _07275 CA264_07280: CA264_07280 - hypothetical protein, at 1,680,818 to 1,681,663 _07280 Position (kb) 1679 1680Strain fitness (log2 ratio) -1 0 1 2at 1678.396 kb on - strand, within CA264_07265at 1678.470 kb on + strand, within CA264_07265at 1678.471 kb on - strand, within CA264_07265at 1678.557 kb on + strand, within CA264_07265at 1678.599 kb on - strand, within CA264_07265at 1678.599 kb on - strand, within CA264_07265at 1678.638 kb on + strandat 1678.674 kb on + strandat 1678.675 kb on - strandat 1678.690 kb on + strandat 1678.691 kb on - strandat 1678.726 kb on + strandat 1678.727 kb on - strandat 1678.729 kb on - strandat 1678.729 kb on - strandat 1678.767 kb on + strandat 1678.767 kb on + strandat 1678.768 kb on - strandat 1678.778 kb on + strandat 1678.815 kb on + strandat 1678.816 kb on - strandat 1678.818 kb on - strandat 1678.857 kb on - strandat 1678.951 kb on + strandat 1679.002 kb on - strandat 1679.057 kb on - strandat 1679.147 kb on + strandat 1679.148 kb on - strandat 1679.151 kb on + strandat 1679.152 kb on - strandat 1679.197 kb on - strandat 1679.233 kb on - strandat 1679.244 kb on - strandat 1679.245 kb on + strandat 1679.247 kb on + strandat 1679.248 kb on - strandat 1679.248 kb on - strandat 1679.332 kb on - strandat 1679.344 kb on - strandat 1679.348 kb on - strandat 1679.411 kb on + strandat 1679.411 kb on + strandat 1679.437 kb on + strandat 1679.516 kb on - strand, within CA264_07270at 1679.628 kb on + strand, within CA264_07270at 1679.628 kb on + strand, within CA264_07270at 1679.629 kb on - strand, within CA264_07270at 1679.658 kb on + strand, within CA264_07270at 1679.686 kb on - strand, within CA264_07270at 1679.715 kb on + strand, within CA264_07270at 1679.716 kb on - strand, within CA264_07270at 1679.716 kb on - strand, within CA264_07270at 1679.772 kb on - strand, within CA264_07270at 1679.857 kb on - strandat 1679.887 kb on + strandat 1679.888 kb on - strandat 1679.889 kb on + strandat 1679.890 kb on - strandat 1679.890 kb on - strandat 1679.892 kb on - strandat 1679.892 kb on - strandat 1679.927 kb on + strandat 1679.927 kb on + strandat 1679.929 kb on + strandat 1679.932 kb on + strandat 1679.933 kb on - strandat 1679.933 kb on - strandat 1679.936 kb on + strandat 1679.938 kb on + strandat 1679.939 kb on - strandat 1679.943 kb on + strandat 1679.959 kb on + strandat 1679.961 kb on + strandat 1679.969 kb on - strandat 1679.977 kb on - strandat 1679.977 kb on - strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.980 kb on + strandat 1679.981 kb on - strandat 1680.010 kb on - strandat 1680.183 kb on + strandat 1680.250 kb on + strand, within CA264_07275at 1680.309 kb on + strand, within CA264_07275at 1680.310 kb on - strand, within CA264_07275at 1680.310 kb on - strand, within CA264_07275at 1680.376 kb on + strand, within CA264_07275at 1680.377 kb on - strand, within CA264_07275at 1680.393 kb on - strand, within CA264_07275at 1680.440 kb on - strand, within CA264_07275at 1680.496 kb on - strand, within CA264_07275at 1680.522 kb on + strand, within CA264_07275at 1680.537 kb on - strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.541 kb on + strand, within CA264_07275at 1680.542 kb on - strand, within CA264_07275at 1680.553 kb on + strand, within CA264_07275at 1680.553 kb on + strand, within CA264_07275at 1680.554 kb on - strand, within CA264_07275at 1680.557 kb on + strand, within CA264_07275at 1680.557 kb on + strand, within CA264_07275at 1680.558 kb on - strand, within CA264_07275at 1680.647 kb on - strand, within CA264_07275at 1680.681 kb on - strand, within CA264_07275at 1680.696 kb on + strand, within CA264_07275at 1680.706 kb on + strand, within CA264_07275at 1680.727 kb on + strand, within CA264_07275at 1680.734 kb on + strand, within CA264_07275at 1680.734 kb on + strand, within CA264_07275at 1680.774 kb on - strandat 1680.774 kb on - strandat 1680.815 kb on - strandat 1680.815 kb on - strandat 1680.819 kb on + strandat 1680.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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1,678,396 - CA264_07265 0.81 -0.1
1,678,470 + CA264_07265 0.84 +0.2
1,678,471 - CA264_07265 0.84 -1.3
1,678,557 + CA264_07265 0.88 -0.5
1,678,599 - CA264_07265 0.89 +0.1
1,678,599 - CA264_07265 0.89 -0.3
1,678,638 + -0.7
1,678,674 + -1.2
1,678,675 - +0.3
1,678,690 + -0.0
1,678,691 - -0.5
1,678,726 + -0.4
1,678,727 - +0.7
1,678,729 - +1.5
1,678,729 - -0.3
1,678,767 + +0.1
1,678,767 + +0.1
1,678,768 - +0.3
1,678,778 + +0.7
1,678,815 + -0.5
1,678,816 - +0.0
1,678,818 - -0.5
1,678,857 - -0.7
1,678,951 + +1.5
1,679,002 - +0.5
1,679,057 - -0.2
1,679,147 + +0.4
1,679,148 - -0.3
1,679,151 + +0.5
1,679,152 - -0.8
1,679,197 - +0.4
1,679,233 - -1.7
1,679,244 - -0.6
1,679,245 + +1.0
1,679,247 + +0.2
1,679,248 - -0.2
1,679,248 - -0.4
1,679,332 - +0.3
1,679,344 - +0.6
1,679,348 - +0.6
1,679,411 + -0.2
1,679,411 + -0.3
1,679,437 + -0.2
1,679,516 - CA264_07270 0.25 -0.2
1,679,628 + CA264_07270 0.49 +0.4
1,679,628 + CA264_07270 0.49 +0.0
1,679,629 - CA264_07270 0.49 +0.0
1,679,658 + CA264_07270 0.55 +0.9
1,679,686 - CA264_07270 0.61 -0.8
1,679,715 + CA264_07270 0.67 +0.4
1,679,716 - CA264_07270 0.68 +1.8
1,679,716 - CA264_07270 0.68 +0.7
1,679,772 - CA264_07270 0.79 +0.1
1,679,857 - -0.4
1,679,887 + -0.4
1,679,888 - -0.3
1,679,889 + +1.0
1,679,890 - +0.1
1,679,890 - -0.0
1,679,892 - +1.9
1,679,892 - -0.8
1,679,927 + -0.5
1,679,927 + -0.2
1,679,929 + -0.8
1,679,932 + -0.0
1,679,933 - +0.1
1,679,933 - +0.2
1,679,936 + +1.1
1,679,938 + -0.3
1,679,939 - +0.6
1,679,943 + +0.3
1,679,959 + +0.5
1,679,961 + -0.1
1,679,969 - -0.8
1,679,977 - -1.4
1,679,977 - -1.2
1,679,980 + +0.0
1,679,980 + +0.1
1,679,980 + +0.2
1,679,980 + +0.1
1,679,981 - +0.6
1,680,010 - -0.2
1,680,183 + -0.2
1,680,250 + CA264_07275 0.10 +0.5
1,680,309 + CA264_07275 0.19 -0.0
1,680,310 - CA264_07275 0.20 +1.1
1,680,310 - CA264_07275 0.20 -0.3
1,680,376 + CA264_07275 0.30 +0.5
1,680,377 - CA264_07275 0.30 -0.0
1,680,393 - CA264_07275 0.33 +0.5
1,680,440 - CA264_07275 0.40 +1.1
1,680,496 - CA264_07275 0.49 -0.8
1,680,522 + CA264_07275 0.53 +0.6
1,680,537 - CA264_07275 0.56 +0.0
1,680,541 + CA264_07275 0.56 +0.5
1,680,541 + CA264_07275 0.56 +0.3
1,680,541 + CA264_07275 0.56 +0.2
1,680,542 - CA264_07275 0.56 -0.8
1,680,553 + CA264_07275 0.58 +0.3
1,680,553 + CA264_07275 0.58 +0.1
1,680,554 - CA264_07275 0.58 +0.4
1,680,557 + CA264_07275 0.59 +1.9
1,680,557 + CA264_07275 0.59 +1.3
1,680,558 - CA264_07275 0.59 -0.0
1,680,647 - CA264_07275 0.73 +0.4
1,680,681 - CA264_07275 0.78 +0.7
1,680,696 + CA264_07275 0.81 -0.2
1,680,706 + CA264_07275 0.82 +0.2
1,680,727 + CA264_07275 0.86 -0.4
1,680,734 + CA264_07275 0.87 +1.3
1,680,734 + CA264_07275 0.87 -0.4
1,680,774 - -0.4
1,680,774 - +1.3
1,680,815 - -0.2
1,680,815 - +0.7
1,680,819 + +0.3
1,680,853 - -0.3

Or see this region's nucleotide sequence