Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07070 and CA264_07075 are separated by 237 nucleotides CA264_07075 and CA264_07080 are separated by 425 nucleotides
CA264_07070: CA264_07070 - DNA polymerase III subunit epsilon, at 1,629,160 to 1,629,714
_07070
CA264_07075: CA264_07075 - hypothetical protein, at 1,629,952 to 1,630,257
_07075
CA264_07080: CA264_07080 - oxidoreductase, at 1,630,683 to 1,631,579
_07080
Position (kb)
1629
1630
1631 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1628.968 kb on + strand at 1629.286 kb on + strand, within CA264_07070 at 1629.287 kb on - strand, within CA264_07070 at 1629.462 kb on + strand, within CA264_07070 at 1629.473 kb on + strand, within CA264_07070 at 1629.473 kb on + strand, within CA264_07070 at 1629.474 kb on - strand, within CA264_07070 at 1629.474 kb on - strand, within CA264_07070 at 1629.702 kb on - strand at 1629.742 kb on + strand at 1629.743 kb on - strand at 1629.743 kb on - strand at 1629.743 kb on - strand at 1629.747 kb on + strand at 1629.798 kb on + strand at 1629.856 kb on + strand at 1629.856 kb on + strand at 1629.857 kb on - strand at 1629.857 kb on - strand at 1629.857 kb on - strand at 1629.857 kb on - strand at 1629.860 kb on + strand at 1629.860 kb on + strand at 1629.860 kb on + strand at 1629.860 kb on + strand at 1629.860 kb on + strand at 1629.861 kb on - strand at 1629.861 kb on - strand at 1629.861 kb on - strand at 1629.870 kb on - strand at 1629.880 kb on - strand at 1629.880 kb on - strand at 1629.880 kb on - strand at 1629.888 kb on + strand at 1629.888 kb on + strand at 1630.005 kb on + strand, within CA264_07075 at 1630.005 kb on + strand, within CA264_07075 at 1630.026 kb on - strand, within CA264_07075 at 1630.051 kb on + strand, within CA264_07075 at 1630.137 kb on + strand, within CA264_07075 at 1630.137 kb on + strand, within CA264_07075 at 1630.137 kb on + strand, within CA264_07075 at 1630.138 kb on - strand, within CA264_07075 at 1630.185 kb on + strand, within CA264_07075 at 1630.186 kb on - strand, within CA264_07075 at 1630.269 kb on + strand at 1630.270 kb on - strand at 1630.299 kb on + strand at 1630.317 kb on + strand at 1630.318 kb on - strand at 1630.341 kb on - strand at 1630.346 kb on + strand at 1630.346 kb on + strand at 1630.347 kb on - strand at 1630.347 kb on - strand at 1630.348 kb on + strand at 1630.348 kb on + strand at 1630.370 kb on + strand at 1630.371 kb on - strand at 1630.427 kb on + strand at 1630.442 kb on + strand at 1630.443 kb on - strand at 1630.444 kb on + strand at 1630.452 kb on - strand at 1630.491 kb on - strand at 1630.558 kb on + strand at 1630.620 kb on - strand at 1630.649 kb on + strand at 1630.653 kb on + strand at 1630.653 kb on + strand at 1630.655 kb on + strand at 1630.656 kb on - strand at 1630.656 kb on - strand at 1630.656 kb on - strand at 1630.656 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.660 kb on - strand at 1630.661 kb on + strand at 1630.661 kb on + strand at 1630.662 kb on - strand at 1630.662 kb on - strand at 1630.665 kb on + strand at 1630.666 kb on - strand at 1630.666 kb on - strand at 1630.666 kb on - strand at 1630.699 kb on + strand at 1630.704 kb on - strand at 1630.714 kb on - strand at 1630.734 kb on + strand at 1630.896 kb on + strand, within CA264_07080 at 1630.932 kb on - strand, within CA264_07080 at 1631.065 kb on + strand, within CA264_07080 at 1631.077 kb on - strand, within CA264_07080 at 1631.077 kb on - strand, within CA264_07080 at 1631.077 kb on - strand, within CA264_07080 at 1631.085 kb on + strand, within CA264_07080 at 1631.113 kb on - strand, within CA264_07080 at 1631.146 kb on + strand, within CA264_07080 at 1631.147 kb on - strand, within CA264_07080 at 1631.151 kb on + strand, within CA264_07080 at 1631.211 kb on + strand, within CA264_07080 at 1631.212 kb on - strand, within CA264_07080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,628,968 + +0.2 1,629,286 + CA264_07070 0.23 +1.1 1,629,287 - CA264_07070 0.23 +0.1 1,629,462 + CA264_07070 0.54 -0.4 1,629,473 + CA264_07070 0.56 +0.1 1,629,473 + CA264_07070 0.56 +0.0 1,629,474 - CA264_07070 0.57 -1.0 1,629,474 - CA264_07070 0.57 +0.8 1,629,702 - -0.2 1,629,742 + -0.4 1,629,743 - -0.1 1,629,743 - -0.6 1,629,743 - -0.7 1,629,747 + +1.9 1,629,798 + -0.2 1,629,856 + -2.9 1,629,856 + +0.8 1,629,857 - +0.7 1,629,857 - -0.2 1,629,857 - -0.1 1,629,857 - +0.4 1,629,860 + +0.0 1,629,860 + +0.3 1,629,860 + -0.5 1,629,860 + -0.3 1,629,860 + -0.3 1,629,861 - -1.2 1,629,861 - -0.1 1,629,861 - +0.4 1,629,870 - +0.7 1,629,880 - +0.6 1,629,880 - -1.5 1,629,880 - -1.5 1,629,888 + -0.2 1,629,888 + +0.7 1,630,005 + CA264_07075 0.17 +0.6 1,630,005 + CA264_07075 0.17 -0.9 1,630,026 - CA264_07075 0.24 +0.5 1,630,051 + CA264_07075 0.32 -0.1 1,630,137 + CA264_07075 0.60 -0.8 1,630,137 + CA264_07075 0.60 -0.2 1,630,137 + CA264_07075 0.60 -0.7 1,630,138 - CA264_07075 0.61 -0.4 1,630,185 + CA264_07075 0.76 +0.5 1,630,186 - CA264_07075 0.76 -0.3 1,630,269 + +1.1 1,630,270 - -0.5 1,630,299 + -0.9 1,630,317 + -0.3 1,630,318 - +0.3 1,630,341 - +0.3 1,630,346 + -0.3 1,630,346 + +0.2 1,630,347 - +1.7 1,630,347 - +1.1 1,630,348 + +0.2 1,630,348 + +0.5 1,630,370 + -0.2 1,630,371 - +0.4 1,630,427 + -1.4 1,630,442 + -1.0 1,630,443 - -0.3 1,630,444 + -0.5 1,630,452 - +1.3 1,630,491 - +0.1 1,630,558 + -0.9 1,630,620 - -0.2 1,630,649 + -0.1 1,630,653 + +0.0 1,630,653 + -0.3 1,630,655 + -0.1 1,630,656 - -0.6 1,630,656 - -0.6 1,630,656 - -0.4 1,630,656 - -0.4 1,630,660 - -0.5 1,630,660 - -0.1 1,630,660 - -0.1 1,630,660 - -0.1 1,630,660 - +0.4 1,630,660 - -0.2 1,630,660 - +0.1 1,630,660 - -0.1 1,630,661 + +0.3 1,630,661 + -0.2 1,630,662 - +0.3 1,630,662 - -0.3 1,630,665 + -0.7 1,630,666 - -0.5 1,630,666 - -1.0 1,630,666 - +0.4 1,630,699 + -0.5 1,630,704 - +0.1 1,630,714 - -0.7 1,630,734 + -0.7 1,630,896 + CA264_07080 0.24 -0.6 1,630,932 - CA264_07080 0.28 -0.6 1,631,065 + CA264_07080 0.43 +1.0 1,631,077 - CA264_07080 0.44 +0.3 1,631,077 - CA264_07080 0.44 -0.9 1,631,077 - CA264_07080 0.44 -0.3 1,631,085 + CA264_07080 0.45 -0.3 1,631,113 - CA264_07080 0.48 +0.3 1,631,146 + CA264_07080 0.52 -0.1 1,631,147 - CA264_07080 0.52 -1.2 1,631,151 + CA264_07080 0.52 -0.2 1,631,211 + CA264_07080 0.59 -0.4 1,631,212 - CA264_07080 0.59 -0.3
Or see this region's nucleotide sequence