Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05575

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05560 and CA264_05565 are separated by 562 nucleotidesCA264_05565 and CA264_05570 are separated by 54 nucleotidesCA264_05570 and CA264_05575 are separated by 132 nucleotidesCA264_05575 and CA264_05580 are separated by 32 nucleotidesCA264_05580 and CA264_05585 are separated by 249 nucleotides CA264_05560: CA264_05560 - hypothetical protein, at 1,294,564 to 1,295,730 _05560 CA264_05565: CA264_05565 - tRNA-Thr, at 1,296,293 to 1,296,365 _05565 CA264_05570: CA264_05570 - tRNA-Thr, at 1,296,420 to 1,296,495 _05570 CA264_05575: CA264_05575 - hypothetical protein, at 1,296,628 to 1,298,721 _05575 CA264_05580: CA264_05580 - hypothetical protein, at 1,298,754 to 1,299,323 _05580 CA264_05585: CA264_05585 - pyridoxamine 5'-phosphate oxidase, at 1,299,573 to 1,300,220 _05585 Position (kb) 1296 1297 1298 1299Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1295.731 kb on - strandat 1295.735 kb on + strandat 1295.756 kb on - strandat 1295.767 kb on - strandat 1295.786 kb on + strandat 1295.798 kb on + strandat 1295.821 kb on + strandat 1295.821 kb on + strandat 1295.823 kb on + strandat 1295.823 kb on + strandat 1295.824 kb on - strandat 1295.827 kb on - strandat 1295.827 kb on - strandat 1295.839 kb on + strandat 1295.840 kb on - strandat 1295.845 kb on + strandat 1295.846 kb on - strandat 1295.857 kb on + strandat 1295.857 kb on + strandat 1295.858 kb on - strandat 1295.858 kb on - strandat 1295.922 kb on - strandat 1295.922 kb on - strandat 1295.924 kb on - strandat 1295.924 kb on - strandat 1296.088 kb on - strandat 1296.120 kb on + strandat 1296.121 kb on - strandat 1296.121 kb on - strandat 1296.127 kb on + strandat 1296.127 kb on + strandat 1296.128 kb on - strandat 1296.133 kb on - strandat 1296.149 kb on + strandat 1296.149 kb on + strandat 1296.167 kb on - strandat 1296.168 kb on + strandat 1296.168 kb on + strandat 1296.169 kb on - strandat 1296.200 kb on - strandat 1296.200 kb on - strandat 1296.289 kb on + strandat 1296.329 kb on + strand, within CA264_05565at 1296.400 kb on - strandat 1296.400 kb on - strandat 1296.595 kb on - strandat 1296.595 kb on - strandat 1296.828 kb on + strandat 1296.853 kb on - strand, within CA264_05575at 1296.946 kb on - strand, within CA264_05575at 1296.946 kb on - strand, within CA264_05575at 1296.952 kb on - strand, within CA264_05575at 1296.978 kb on + strand, within CA264_05575at 1296.978 kb on + strand, within CA264_05575at 1297.253 kb on - strand, within CA264_05575at 1297.400 kb on + strand, within CA264_05575at 1297.400 kb on + strand, within CA264_05575at 1297.401 kb on - strand, within CA264_05575at 1297.616 kb on + strand, within CA264_05575at 1297.636 kb on + strand, within CA264_05575at 1297.637 kb on - strand, within CA264_05575at 1297.656 kb on + strand, within CA264_05575at 1297.657 kb on - strand, within CA264_05575at 1297.753 kb on + strand, within CA264_05575at 1297.756 kb on - strand, within CA264_05575at 1298.181 kb on + strand, within CA264_05575at 1298.333 kb on + strand, within CA264_05575at 1298.341 kb on - strand, within CA264_05575at 1298.454 kb on + strand, within CA264_05575at 1298.455 kb on - strand, within CA264_05575at 1298.455 kb on - strand, within CA264_05575at 1298.725 kb on + strandat 1298.725 kb on + strandat 1298.738 kb on - strandat 1298.745 kb on - strandat 1298.745 kb on - strandat 1298.745 kb on - strandat 1298.745 kb on - strandat 1298.745 kb on - strandat 1298.745 kb on - strandat 1298.747 kb on - strandat 1298.841 kb on + strand, within CA264_05580at 1298.841 kb on + strand, within CA264_05580at 1298.862 kb on - strand, within CA264_05580at 1298.880 kb on + strand, within CA264_05580at 1298.881 kb on - strand, within CA264_05580at 1299.022 kb on + strand, within CA264_05580at 1299.076 kb on + strand, within CA264_05580at 1299.092 kb on - strand, within CA264_05580at 1299.092 kb on - strand, within CA264_05580at 1299.225 kb on + strand, within CA264_05580at 1299.226 kb on - strand, within CA264_05580at 1299.279 kb on - strandat 1299.282 kb on + strandat 1299.282 kb on + strandat 1299.282 kb on + strandat 1299.282 kb on + strandat 1299.283 kb on - strandat 1299.283 kb on - strandat 1299.341 kb on - strandat 1299.341 kb on - strandat 1299.341 kb on - strandat 1299.378 kb on + strandat 1299.400 kb on + strandat 1299.401 kb on - strandat 1299.410 kb on - strandat 1299.444 kb on + strandat 1299.468 kb on + strandat 1299.473 kb on + strandat 1299.473 kb on + strandat 1299.473 kb on + strandat 1299.477 kb on - strandat 1299.477 kb on - strandat 1299.477 kb on - strandat 1299.480 kb on + strandat 1299.480 kb on + strandat 1299.481 kb on - strandat 1299.481 kb on - strandat 1299.482 kb on + strandat 1299.482 kb on + strandat 1299.486 kb on - strandat 1299.486 kb on - strandat 1299.486 kb on - strandat 1299.486 kb on - strandat 1299.486 kb on - strandat 1299.523 kb on - strandat 1299.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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1,295,731 - +0.0
1,295,735 + +0.0
1,295,756 - +0.4
1,295,767 - -0.3
1,295,786 + -0.1
1,295,798 + -0.2
1,295,821 + +0.3
1,295,821 + -0.2
1,295,823 + -0.3
1,295,823 + +1.4
1,295,824 - -0.4
1,295,827 - +0.4
1,295,827 - -0.6
1,295,839 + +0.1
1,295,840 - -1.1
1,295,845 + +1.4
1,295,846 - -0.9
1,295,857 + -0.1
1,295,857 + -0.2
1,295,858 - -1.1
1,295,858 - -0.7
1,295,922 - -0.5
1,295,922 - +0.4
1,295,924 - -0.3
1,295,924 - -0.1
1,296,088 - -0.1
1,296,120 + -0.7
1,296,121 - +0.7
1,296,121 - -0.2
1,296,127 + -0.7
1,296,127 + -0.3
1,296,128 - +0.1
1,296,133 - +0.1
1,296,149 + +0.1
1,296,149 + -0.3
1,296,167 - +0.9
1,296,168 + -0.2
1,296,168 + -0.4
1,296,169 - -0.8
1,296,200 - -0.8
1,296,200 - -1.6
1,296,289 + +0.3
1,296,329 + CA264_05565 0.49 -1.2
1,296,400 - -0.5
1,296,400 - -0.3
1,296,595 - -0.4
1,296,595 - -0.8
1,296,828 + -0.5
1,296,853 - CA264_05575 0.11 +0.5
1,296,946 - CA264_05575 0.15 -0.1
1,296,946 - CA264_05575 0.15 -0.5
1,296,952 - CA264_05575 0.15 -0.3
1,296,978 + CA264_05575 0.17 +0.5
1,296,978 + CA264_05575 0.17 +0.2
1,297,253 - CA264_05575 0.30 -0.5
1,297,400 + CA264_05575 0.37 -0.1
1,297,400 + CA264_05575 0.37 -0.3
1,297,401 - CA264_05575 0.37 +0.1
1,297,616 + CA264_05575 0.47 +1.2
1,297,636 + CA264_05575 0.48 -0.0
1,297,637 - CA264_05575 0.48 -2.5
1,297,656 + CA264_05575 0.49 +0.0
1,297,657 - CA264_05575 0.49 -0.8
1,297,753 + CA264_05575 0.54 -0.6
1,297,756 - CA264_05575 0.54 -0.2
1,298,181 + CA264_05575 0.74 +0.5
1,298,333 + CA264_05575 0.81 -0.2
1,298,341 - CA264_05575 0.82 -0.0
1,298,454 + CA264_05575 0.87 +0.8
1,298,455 - CA264_05575 0.87 +0.8
1,298,455 - CA264_05575 0.87 +0.4
1,298,725 + +0.4
1,298,725 + -0.3
1,298,738 - -3.0
1,298,745 - +0.1
1,298,745 - -0.3
1,298,745 - +0.7
1,298,745 - +1.6
1,298,745 - +1.1
1,298,745 - +0.4
1,298,747 - +0.1
1,298,841 + CA264_05580 0.15 -0.1
1,298,841 + CA264_05580 0.15 +0.2
1,298,862 - CA264_05580 0.19 +0.2
1,298,880 + CA264_05580 0.22 +0.7
1,298,881 - CA264_05580 0.22 -0.2
1,299,022 + CA264_05580 0.47 -0.8
1,299,076 + CA264_05580 0.56 +0.4
1,299,092 - CA264_05580 0.59 -2.9
1,299,092 - CA264_05580 0.59 -0.6
1,299,225 + CA264_05580 0.83 -0.4
1,299,226 - CA264_05580 0.83 +0.0
1,299,279 - -1.1
1,299,282 + -0.1
1,299,282 + -0.1
1,299,282 + +0.0
1,299,282 + -0.0
1,299,283 - -0.3
1,299,283 - -0.2
1,299,341 - +1.4
1,299,341 - -0.8
1,299,341 - +0.5
1,299,378 + +0.4
1,299,400 + +0.0
1,299,401 - +0.0
1,299,410 - -0.6
1,299,444 + -1.5
1,299,468 + +1.3
1,299,473 + +0.4
1,299,473 + -0.1
1,299,473 + -0.2
1,299,477 - -1.0
1,299,477 - -1.3
1,299,477 - -0.4
1,299,480 + -0.1
1,299,480 + +0.4
1,299,481 - -0.8
1,299,481 - -0.2
1,299,482 + +1.8
1,299,482 + +0.1
1,299,486 - +1.6
1,299,486 - -0.6
1,299,486 - -0.3
1,299,486 - -0.4
1,299,486 - -0.1
1,299,523 - -1.0
1,299,581 - -0.2

Or see this region's nucleotide sequence