Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05565

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05560 and CA264_05565 are separated by 562 nucleotidesCA264_05565 and CA264_05570 are separated by 54 nucleotidesCA264_05570 and CA264_05575 are separated by 132 nucleotides CA264_05560: CA264_05560 - hypothetical protein, at 1,294,564 to 1,295,730 _05560 CA264_05565: CA264_05565 - tRNA-Thr, at 1,296,293 to 1,296,365 _05565 CA264_05570: CA264_05570 - tRNA-Thr, at 1,296,420 to 1,296,495 _05570 CA264_05575: CA264_05575 - hypothetical protein, at 1,296,628 to 1,298,721 _05575 Position (kb) 1296 1297Strain fitness (log2 ratio) -1 0 1at 1295.731 kb on - strandat 1295.735 kb on + strandat 1295.756 kb on - strandat 1295.767 kb on - strandat 1295.786 kb on + strandat 1295.798 kb on + strandat 1295.821 kb on + strandat 1295.821 kb on + strandat 1295.823 kb on + strandat 1295.823 kb on + strandat 1295.824 kb on - strandat 1295.827 kb on - strandat 1295.827 kb on - strandat 1295.839 kb on + strandat 1295.840 kb on - strandat 1295.845 kb on + strandat 1295.846 kb on - strandat 1295.857 kb on + strandat 1295.857 kb on + strandat 1295.858 kb on - strandat 1295.858 kb on - strandat 1295.922 kb on - strandat 1295.922 kb on - strandat 1295.924 kb on - strandat 1295.924 kb on - strandat 1296.088 kb on - strandat 1296.120 kb on + strandat 1296.121 kb on - strandat 1296.121 kb on - strandat 1296.127 kb on + strandat 1296.127 kb on + strandat 1296.128 kb on - strandat 1296.133 kb on - strandat 1296.149 kb on + strandat 1296.149 kb on + strandat 1296.167 kb on - strandat 1296.168 kb on + strandat 1296.168 kb on + strandat 1296.169 kb on - strandat 1296.200 kb on - strandat 1296.200 kb on - strandat 1296.289 kb on + strandat 1296.329 kb on + strand, within CA264_05565at 1296.400 kb on - strandat 1296.400 kb on - strandat 1296.595 kb on - strandat 1296.595 kb on - strandat 1296.828 kb on + strandat 1296.853 kb on - strand, within CA264_05575at 1296.946 kb on - strand, within CA264_05575at 1296.946 kb on - strand, within CA264_05575at 1296.952 kb on - strand, within CA264_05575at 1296.978 kb on + strand, within CA264_05575at 1296.978 kb on + strand, within CA264_05575at 1297.253 kb on - strand, within CA264_05575

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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1,295,731 - +0.0
1,295,735 + +0.0
1,295,756 - +0.4
1,295,767 - -0.3
1,295,786 + -0.1
1,295,798 + -0.2
1,295,821 + +0.3
1,295,821 + -0.2
1,295,823 + -0.3
1,295,823 + +1.4
1,295,824 - -0.4
1,295,827 - +0.4
1,295,827 - -0.6
1,295,839 + +0.1
1,295,840 - -1.1
1,295,845 + +1.4
1,295,846 - -0.9
1,295,857 + -0.1
1,295,857 + -0.2
1,295,858 - -1.1
1,295,858 - -0.7
1,295,922 - -0.5
1,295,922 - +0.4
1,295,924 - -0.3
1,295,924 - -0.1
1,296,088 - -0.1
1,296,120 + -0.7
1,296,121 - +0.7
1,296,121 - -0.2
1,296,127 + -0.7
1,296,127 + -0.3
1,296,128 - +0.1
1,296,133 - +0.1
1,296,149 + +0.1
1,296,149 + -0.3
1,296,167 - +0.9
1,296,168 + -0.2
1,296,168 + -0.4
1,296,169 - -0.8
1,296,200 - -0.8
1,296,200 - -1.6
1,296,289 + +0.3
1,296,329 + CA264_05565 0.49 -1.2
1,296,400 - -0.5
1,296,400 - -0.3
1,296,595 - -0.4
1,296,595 - -0.8
1,296,828 + -0.5
1,296,853 - CA264_05575 0.11 +0.5
1,296,946 - CA264_05575 0.15 -0.1
1,296,946 - CA264_05575 0.15 -0.5
1,296,952 - CA264_05575 0.15 -0.3
1,296,978 + CA264_05575 0.17 +0.5
1,296,978 + CA264_05575 0.17 +0.2
1,297,253 - CA264_05575 0.30 -0.5

Or see this region's nucleotide sequence